Simone M. Cacciò

Istituto Superiore di Sanità — Italy

Immunology and Microbiology · Life Sciences

54h-index11.7kcitations196works8.32yr avg
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Research Topics

Parasitic Infections and Diagnostics(148), Amoebic Infections and Treatments(76), Viral gastroenteritis research and epidemiology(20), Parasitic infections in humans and animals(14), Toxoplasma gondii Research Studies(13)

Publications196 total

Host range expansion of asexual parasite can be explained by loss of adaptions in Muller’s Ratchet
Nature Communications·2025Open Access
Parapipe: a pipeline for parasite next-generation sequencing data analysis applied to Cryptosporidium
Access Microbiology·2025· 2 citedOpen Access
Molecular Epidemiology of Cryptosporidium spp., Giardia duodenalis, and Enterocytozoon bieneusi in Guizhou Angus Calves: Dominance of Angus Cattle-Adapted Genotypes and Zoonotic Potential of E. bieneusi
Microorganisms·2025Open Access
Parapipe: A Pipeline for Parasite Next-Generation Sequencing Data Analysis Applied to Cryptosporidium
2025Open Access
Detection of parasites in food and water matrices by shotgun metagenomics: A narrative review
Food and Waterborne Parasitology·2025· 4 citedOpen Access
Parapipe: A Pipeline for Parasite Next-Generation Sequencing Data Analysis Applied to Cryptosporidium
2025Open Access
Parapipe: a Pipeline for Handling Parasite NGS Datasets and its Application to Cryptosporidium
2025Open Access
Design, development, and testing of a new multi-locus sequence typing scheme for the zoonotic pathogen Cryptosporidium parvum
Current Research in Parasitology and Vector-Borne Diseases·2025· 1 citedOpen Access
Host range expansion of asexual parasite can be explained by loss of adaptions in Muller’s Ratchet
2024Open Access
Comprehensive analysis of flavohemoprotein copy number variation in Giardia intestinalis: exploring links to metronidazole resistance
Parasites & Vectors·2024· 4 citedOpen Access
Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries
Cell·2024· 69 citedOpen Access
Comparative genomics of <i>Cryptosporidium parvum</i> reveals the emergence of an outbreak-associated population in Europe and its spread to the United States
Genome Research·2024· 10 citedOpen Access
Novel strategy to quantify the viability of oocysts of Cryptosporidium parvum and C. hominis, a risk factor of the waterborne protozoan pathogens of public health concern
Water Research·2024· 6 citedOpen Access
Mitochondrial genetic diversity and phylogenetic relationships of Echinococcus multilocularis in Europe
International Journal for Parasitology·2024· 20 citedOpen Access
Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method
European Journal of Clinical Microbiology & Infectious Diseases·2023· 16 citedOpen Access
Highly contiguous genomes of Giardia duodenalis isolates
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Highly contiguous genomes of Giardia duodenalis isolates
2023Open Access
Comparative genomics reveals the emergence of an outbreak-associated <i>Cryptosporidium parvum</i> population in Europe and its spread to the USA
2023Open Access
European Union Reference Laboratories support the National food, feed and veterinary Reference Laboratories with rolling out whole genome sequencing in Europe
Microbial Genomics·2023· 9 citedOpen Access
Highly contiguous genomes of human clinical isolates of Giardia duodenalis reveal assemblage- and sub-assemblage-specific presence–absence variation in protein-coding genes
Microbial Genomics·2023· 15 citedOpen Access
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Frequent Co-authors

Edoardo Pozio(11), Marco Lalle(5), H.V. Smith(4), Relja Beck(4), Edoardo Pozio(4), R.C.A. Thompson(3), Hein Sprong(3), Norman J. Pieniąžek(3), Rachel M. Chalmers(3), Jim McLauchlin(2), Una Ryan(2), M. De Giacomo(2), Susan B. Slemenda(2), Albert Marinculić(2), Andy Tait(2), Edoardo Pasolli(2), Lorenza Putignani(2), Nicola Segata(2), Avelino Álvarez‐Ordóñez(2), Thomas Geurden(2)