Akifumi Yamashita

National Institute of Infectious Diseases — Japan

Medicine · Health Sciences

23h-index1.7kcitations51works0.02yr avg
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Research Topics

Mosquito-borne diseases and control(10), Viral Infections and Vectors(7), Genomics and Phylogenetic Studies(6), Bacteriophages and microbial interactions(6), Influenza Virus Research Studies(5)

Publications51 total

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database
Scientific Reports·2019· 18 citedOpen Access
Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis
PLoS ONE·2019· 20 citedOpen Access
Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria
Gut Microbes·2018· 123 citedOpen Access
The habu genome reveals accelerated evolution of venom protein genes
Scientific Reports·2018· 75 citedOpen Access
Decrease in the prevalence of extended-spectrum cephalosporin-resistant Salmonella following cessation of ceftiofur use by the Japanese poultry industry
International Journal of Food Microbiology·2018· 37 cited
STUDY ON GRASP OF CURRENT CONDITION OF THE RIP CURRENT TO OCCUR IN SANDY BEACH
Journal of Japan Society of Civil Engineers Ser B2 (Coastal Engineering)·2018· 1 citedOpen Access
Isolation and Complete Genome Sequencing of Zika Virus Imported from the Dominican Republic to Japan
Japanese Journal of Infectious Diseases·2017· 5 citedOpen Access
A summary of the imported cases of Chikungunya fever in Japan from 2006 to June 2016
Journal of Travel Medicine·2017· 16 citedOpen Access
Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974–2015
Frontiers in Microbiology·2017· 67 citedOpen Access
Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids
Scientific Reports·2017· 57 citedOpen Access
次世代シークエンサー(NGS)を利用した健康ブロイラー由来第3世代セファロスポリン耐性大腸菌の分子疫学的解析
日本獣医学会学術集会講演要旨集·2017
Characterization of the Pathogenicity of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess Based on the Complete Genome Sequence with Transcriptome Analysis and Transposon Mutagenesis in a Murine Subcutaneous Abscess Model
Infection and Immunity·2016· 22 citedOpen Access
Prevalence of Colistin Resistance Gene <i>mcr-1</i> and Absence of <i>mcr-2</i> in Escherichia coli Isolated from Healthy Food-Producing Animals in Japan
Antimicrobial Agents and Chemotherapy·2016· 57 citedOpen Access
DGV: Dengue Genographic Viewer
Frontiers in Microbiology·2016· 24 citedOpen Access
Two different dengue virus strains in the Japanese epidemics of 2014
Virus Genes·2016· 13 cited
Distribution and Relationships of Antimicrobial Resistance Determinants among Extended-Spectrum-Cephalosporin-Resistant or Carbapenem-Resistant Escherichia coli Isolates from Rivers and Sewage Treatment Plants in India
Antimicrobial Agents and Chemotherapy·2016· 99 citedOpen Access
VirusTAP: Viral Genome-Targeted Assembly Pipeline
Frontiers in Microbiology·2016· 73 citedOpen Access
地方衛生研究所の連携による食品由来病原微生物の網羅的ゲノム解析を基盤とする新たな食品の安全確保対策に関する研究 愛媛県内で,患者,食材,家畜から分離されたサルモネラ株の次世代シークエンサーによるゲノム解析(3)
2016
TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing
PLoS ONE·2015· 88 citedOpen Access
Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis
Frontiers in Microbiology·2015· 79 citedOpen Access
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Frequent Co-authors

Tsuyoshi Sekizuka(20), Makoto Kuroda(19), Kazuyoshi Ikuta(15), Teruo Yasunaga(10), Kengo Kato(10), Takeshi Kurosu(6), Ritsuko Kubota‐Koketsu(5), Yoshinobu Okuno(5), Takaaki Nakaya(4), Norihito Kawashita(4), Kazunori Shimada(4), Hiromichi Yamanishi(4), Tadahiro Sasaki(4), N. Goto(3), Satoshi Mitarai(3), Seiya Kato(3), Mayo Yasugi(3), Anariwa Du(3), Motoki Kuhara(3), Naphatsawan Boonsathorn(3)