Ruiqing Zheng

Central South University — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

22h-index1.8kcitations95works3.22yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Single-cell and spatial transcriptomics(38), Gene expression and cancer classification(33), Bioinformatics and Genomic Networks(24), Gene Regulatory Network Analysis(18), Machine Learning in Bioinformatics(14)

Publications95 total

GRAVITY: Dynamic gene regulatory network-enhanced RNA velocity modeling for trajectory inference and biological discovery
2026
scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment
Genome Research·2026
An unsupervised method for spatial transcriptomics analysis based on adversarial autoencoder
Briefings in Bioinformatics·2026Open Access
GateFuseNet: An Adaptive 3D Multimodal Neuroimaging Fusion Network for Parkinson's Disease Diagnosis
2025
DeepDICI: Accurately Predicting Drug-Ion Channel Interactions via Deep Learning with Dynamic Structural Features
2025
DP-GPT: GPT-Driven Gene Text Feature Embedding Fused with Gene Expression Data for Depression Prediction
2025
scHLens: a web server for hierarchically and interactively exploring single cell RNA-seq data
Briefings in Bioinformatics·2025Open Access
Dynamic Residual Encoding with Slide-Level Contrastive Learning for End-to-End Whole Slide Image Representation
2025Open Access
DISHIC: An Effective Method for Identifying Differential Interaction in Single-Cell Hi-C
IEEE Transactions on Computational Biology and Bioinformatics·2025
SpaNN: Spatial Transcriptomic Data Enhancement Using Deep Neural Network
IEEE Transactions on Computational Biology and Bioinformatics·2025
Incorporating multi-scale module kernel for disease-gene identification in biological networks
Tsinghua Science & Technology·2025· 1 citedOpen Access
ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration
Genomics Proteomics & Bioinformatics·2025Open Access
Contrastive Learning-Based Method for Single-Cell Multi-omics Data Clustering
Lecture notes in computer science·2025
A Flexible Data-Driven Framework for Correcting Coarsely Annotated scRNA-seq Data
Big Data Mining and Analytics·2025Open Access
Leveraging protein language models for cross-variant CRISPR/Cas9 sgRNA activity prediction
Bioinformatics·2025· 5 citedOpen Access
Association of peripheral blood inflammatory biomarkers and poor clinical outcomes in adult stroke patients with moyamoya disease
Journal of Stroke and Cerebrovascular Diseases·2025· 1 citedOpen Access
Integration of multi-omics data accelerates molecular analysis of common wheat traits
Nature Communications·2025· 26 citedOpen Access
DPGOK: A Deep Learning-Based Method for Protein Function Prediction by Fusing GO Knowledge With Protein Features
IEEE Journal of Biomedical and Health Informatics·2025
scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis
PLoS Computational Biology·2024· 13 citedOpen Access
Mosaic integration of spatial multi-omics with SpaMosaic
2024· 1 citedOpen Access
page 1 of 5Next →

Frequent Co-authors

Min Li(31), Fang‐Xiang Wu(18), Jianxin Wang(18), Xuhua Yan(9), Yi Pan(8), Zhenlan Liang(7), Yaohang Li(6), Wei Lan(5), Jin Liu(4), Xingyi Li(3), Ju Xiang(3), Yu Tian(3), Siqi Chen(3), Min Li(3), Min Li(3), Yake Wang(2), Xinghua Shi(2), Min Zeng(2), Qingfeng Chen(2), Xiang Chen(2)