François Ribalet

University of Washington — United States

Earth and Planetary Sciences · Physical Sciences

27h-index2.8kcitations141works4.92yr avg
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Research Topics

Marine and coastal ecosystems(59), Microbial Community Ecology and Physiology(47), Marine Biology and Ecology Research(35), Single-cell and spatial transcriptomics(23), Esophageal Cancer Research and Treatment(16)

Publications141 total

Automated Gating for Flow Cytometry Data Using a Kernel-Smoothed EM Algorithm
arXiv (Cornell University)·2025Open Access
Publisher Correction: Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity
Nature Microbiology·2025· 1 citedOpen Access
Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity
Nature Microbiology·2025· 8 citedOpen Access
Mixtures of Neural Network Experts with Application to Phytoplankton Flow Cytometry Data
arXiv (Cornell University)·2025Open Access
Iron availability modulates bacteria carbon cycling in the mesopelagic
2025Open Access
Shifts in phytoplankton community structure across oceanic boundaries
PLoS ONE·2025Open Access
Dataset for "Trend Filtered Mixture of Experts for Automated Gating of High-Frequency Flow Cytometry Data" (preprint: https://arxiv.org/abs/2504.12287).
arXiv (Cornell University)·2025Open Access
Latitudinal patterns in ocean C:N:P reflect phytoplankton acclimation and macromolecular composition
Proceedings of the National Academy of Sciences·2024· 14 citedOpen Access
The dark side of the biological carbon pump: iron availability modulates bacteria growth in the mesopelagic ocean
2024Open Access
High‐frequency sampling captures variability in phytoplankton population‐specific periodicity, growth, and productivity
Limnology and Oceanography·2024· 6 citedOpen Access
SeaFlow data v1: High-resolution abundance, size and biomass of small phytoplankton measured by flow-cytometry
Zenodo (CERN European Organization for Nuclear Research)·2024· 2 citedOpen Access
Multiple biotic interactions establish phytoplankton community structure across environmental gradients
Limnology and Oceanography·2024· 13 citedOpen Access
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre
Nature Communications·2024· 13 citedOpen Access
Amplicon sequencing with internal standards yields accurate picocyanobacteria cell abundances as validated with flow cytometry
ISME Communications·2024· 11 citedOpen Access
Towards a repository and reproducible tools for aquatic flow cytometry data
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Discrete Flow Cytometry of Underway Samples from TN413 Using a BD Influx Cell Sorter
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Discrete Flow Cytometry of Underway Samples from TN413 Using a BD Influx Cell Sorter
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Discrete Flow Cytometry of Underway Samples from TN414 Using a BD Influx Cell Sorter
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Discrete Flow Cytometry of Underway Samples from TN414 Using a BD Influx Cell Sorter
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Determining drivers of phytoplankton carbon to chlorophyll ratio at Atlantic Basin scale
Frontiers in Marine Science·2023· 8 citedOpen Access
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Frequent Co-authors

E. Virginia Armbrust(38), Angelicque White(18), David M. Karl(9), Michael Carlson(9), Anitra E. Ingalls(8), Bryndan P. Durham(8), Mathilde Dugenne(8), Raffaella Casotti(7), Sara Ferrón(7), Annette Hynes(7), John R. Casey(6), Jarred E. Swalwell(6), Sophie Clayton(6), Debbie Lindell(6), Katherine R. Heal(5), Samuel T. Wilson(5), David A. Caron(5), Jonathan P. Zehr(5), Edward F. DeLong(5), Seth G. John(5)