Carsen Stringer

Howard Hughes Medical Institute — United States

Neuroscience · Life Sciences

29h-index11.9kcitations66works36.32yr avg
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Research Topics

Neural dynamics and brain function(31), Cell Image Analysis Techniques(17), Neuroscience and Neuropharmacology Research(10), Visual perception and processing mechanisms(9), Image Processing Techniques and Applications(7)

Publications65 total

Whole-Brain Co-Mapping of Gene Expression and Neuronal Activity at Cellular Resolution in Behaving Zebrafish
2026Open Access
Extracting large-scale neural activity with Suite2p
2026Open Access
Orofacial behaviors, not eye movements, govern neural activity in mouse visual cortex
2026Open Access
Functional MRI signals as fast as 1Hz are coupled to brain states and predict spontaneous neural activity
2025Open Access
Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans
PLoS Computational Biology·2025· 1 citedOpen Access
Spatial predictive coding in visual cortical neurons
2025Open Access
Abstract B049: Deep Learning Enables Identification of Cell Types and Clusters (iCTC) in Immune Tumor Ecosystems for Prognostic Assessment in Cancer
Clinical Cancer Research·2025
A simplified minimodel of visual cortical neurons
Nature Communications·2025· 1 citedOpen Access
Unsupervised pretraining in biological neural networks
Nature·2025· 16 citedOpen Access
Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.
Journal of Clinical Oncology·2025
Spatial transcriptomics reveals human cortical layer and area specification
Nature·2025· 32 citedOpen Access
Cellpose-SAM: superhuman generalization for cellular segmentation
2025· 95 citedOpen Access
Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer
Cancer Research·2025
Deep-tissue transcriptomics and subcellular imaging at high spatial resolution
Science·2025· 37 citedOpen Access
Learning produces an orthogonalized state machine in the hippocampus
Nature·2025· 32 citedOpen Access
Cellpose3: one-click image restoration for improved cellular segmentation
Nature Methods·2025· 216 citedOpen Access
A critical initialization for biological neural networks
2025· 4 citedOpen Access
Analysis methods for large-scale neuronal recordings
Science·2024· 18 cited
Rastermap: a discovery method for neural population recordings
Nature Neuroscience·2024· 39 citedOpen Access
A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging
Nature Methods·2024· 43 citedOpen Access
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Frequent Co-authors

Marius Pachitariu(33), Kenneth D. Harris(10), Nicholas A. Steinmetz(6), Lin Zhong(6), Michalis Michaelos(5), Matteo Carandini(5), Atika Syeda(4), Rachel Gattoni(4), Daniel Flickinger(4), Michael Okun(3), Péter Barthó(3), Maneesh Sahani(3), Nicholas A. Lesica(3), Fengtong Du(3), Titipat Achakulvisut(3), Athena Akrami(3), Gunnar Blohm(3), Eric DeWitt(3), Alexandre Hyafil(3), Konrad P. Körding(3)