Ernst Oberortner

Joint Genome Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

17h-index1.1kcitations40works0.02yr avg
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Research Topics

Gene Regulatory Network Analysis(21), Microbial Metabolic Engineering and Bioproduction(15), Service-Oriented Architecture and Web Services(12), Bioinformatics and Genomic Networks(10), Advanced Software Engineering Methodologies(9)

Publications40 total

Synthetic biology open language (SBOL) version 3.1.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2023· 53 citedOpen Access
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering
Frontiers in Bioengineering and Biotechnology·2020· 65 citedOpen Access
Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
Proceedings of the National Academy of Sciences·2020· 26 citedOpen Access
Synthetic biology open language (SBOL) version 3.0.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 29 citedOpen Access
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2020· 40 citedOpen Access
An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology
Methods in molecular biology·2020· 5 citedOpen Access
DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors
Synthetic Biology·2020· 7 citedOpen Access
Synthetic Biology Open Language (SBOL) Version 2.3
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2019· 38 citedOpen Access
Synthetic Biology Open Language (SBOL) Version 2.2.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2018· 33 citedOpen Access
An integrated workflow for phenazine-modifying enzyme characterization
Journal of Industrial Microbiology & Biotechnology·2018· 8 citedOpen Access
A standard-enabled workflow for synthetic biology
Biochemical Society Transactions·2017· 43 citedOpen Access
Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
ACS Synthetic Biology·2016· 75 citedOpen Access
BBF RFC 112: Synthetic Biology Open Language (SBOL) Version 2.1.0
DSpace@MIT (Massachusetts Institute of Technology)·2016Open Access
Synthetic Biology Open Language (SBOL) Version 2.1.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2016· 17 citedOpen Access
Sharing Structure and Function in Biological Design with SBOL 2.0
ACS Synthetic Biology·2016· 84 cited
libSBOLj 2.0: A Java Library to Support SBOL 2.0
IEEE Life Sciences Letters·2016· 1 cited
libSBOLj 2.0: A Java Library to Support SBOL 2.0
IEEE Life Sciences Letters·2015· 25 citedOpen Access
BBF RFC 108: Synthetic Biology Open Language (SBOL) Version 2.0.0
DSpace@MIT (Massachusetts Institute of Technology)·2015· 1 citedOpen Access
Synthetic Biology Open Language (SBOL) Version 2.0.0
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics·2015· 38 citedOpen Access
Synthetic Biology Open Language (SBOL) Version 2.0.0
PubMed·2015· 29 citedOpen Access
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Frequent Co-authors

Göksel Mısırlı(18), Anil Wipat(17), Chris J. Myers(17), Nicholas Roehner(15), Jacob Beal(14), Bryan Bartley(13), Herbert M. Sauro(13), Kevin Clancy(12), Matthew Pocock(12), Tramy Nguyen(11), Raik Grünberg(10), John H. Gennari(10), Curtis Madsen(10), Schahram Dustdar(9), Zach Zundel(8), Uwe Zdun(8), James Alastair McLaughlin(7), Meher Samineni(7), Douglas Densmore(6), M.G. Bissell(6)