Gregor Rot

SIB Swiss Institute of Bioinformatics — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

16h-index4.3kcitations53works6.82yr avg
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Research Topics

RNA Research and Splicing(24), RNA modifications and cancer(17), Genetics, Aging, and Longevity in Model Organisms(15), Invertebrate Immune Response Mechanisms(14), RNA and protein synthesis mechanisms(12)

Publications53 total

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
Cell·2026Open Access
The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
2025· 15 citedOpen Access
The Arabidopsis U1 snRNP regulates mRNA 3′-end processing
Nature Plants·2024· 11 citedOpen Access
<i>splicekit</i>: an integrative toolkit for splicing analysis from short-read RNA-seq
Bioinformatics Advances·2024· 1 citedOpen Access
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
RNA·2023· 16 citedOpen Access
The Arabidopsis U1 snRNP regulates mRNA 3’-end processing
2023· 4 citedOpen Access
APAeval: Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
Edinburgh Research Explorer·2023Open Access
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
2023· 4 citedOpen Access
splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq
2023Open Access
Analysis of RNA Polyadenylation in Healthy and Osteoarthritic Human Articular Cartilage
International Journal of Molecular Sciences·2023· 5 citedOpen Access
Analysis of RNA polyadenylation in healthy and osteoarthritic human articular cartilage
2022Open Access
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians
PLoS Biology·2022· 15 citedOpen Access
USE OF A 3’ RNA SEQUENCING APPROACH TO DETERMINE DIFFERENTIAL TRANSCRIPT EXPRESSION AND ALTERNATIVE POLYADENYLATION SITE USAGE BETWEEN AGE MATCHED, HEALTHY AND OSTEOARTHRITIC KNEE CARTILAGE
Osteoarthritis and Cartilage·2022· 1 cited
Correction to: A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
BMC Genomics·2022Open Access
Additional file 23 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
Figshare·2022Open Access
A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
BMC Genomics·2021· 8 citedOpen Access
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians
2021Open Access
Additional file 15 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
Figshare·2021Open Access
Additional file 11 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
Figshare·2021Open Access
Additional file 16 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
Figshare·2021Open Access
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Frequent Co-authors

Tomaž Curk(16), Blaž Zupan(15), Jernej Ule(14), Yu Bai(14), Emmanuel Caussinus(14), Stefano Léo(14), Fritz Bosshardt(14), Faina Myachina(14), Mark D. Robinson(14), Christian F. Lehner(14), Melis Kayikci(6), Kathi Zarnack(5), Boris Rogelj(5), Nicholas M. Luscombe(4), Miha Modic(4), Gad Shaulsky(4), Christian von Mering(4), Julian König(3), James Tollervey(3), Michael Briese(3)