Olivier Clermont

Inserm — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

62h-index22.3kcitations182works17.72yr avg
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Research Topics

Escherichia coli research studies(86), Antibiotic Resistance in Bacteria(79), Bacterial Genetics and Biotechnology(29), Bacteriophages and microbial interactions(27), Gut microbiota and health(20)

Publications181 total

Influence of iron uptake systems on cefiderocol activity in <i>Escherichia coli</i> : at the crossroads of antibiotic resistance and virulence
2025Open Access
Residence-colonization trade-off and niche differentiation enable coexistence of Escherichia coli phylogroups in healthy humans
The ISME Journal·2025· 6 citedOpen Access
Strain phylogroup and environmental constraints shape <i>Escherichia coli</i> dynamics and diversity over a 20-year human gut time series
The ISME Journal·2024· 6 citedOpen Access
Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information
Nature Microbiology·2024· 95 citedOpen Access
Variable fitness effects of bacteriophage resistance mutations in <i>Escherichia coli:</i> implications for phage therapy
Journal of Virology·2024· 14 citedOpen Access
Implementation of the WHO Tricycle protocol for surveillance of extended-spectrum β-lactamase producing Escherichia coli in humans, chickens, and the environment in Madagascar: a prospective genomic epidemiology study
The Lancet Microbe·2024· 29 citedOpen Access
Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event
Antimicrobial Agents and Chemotherapy·2024· 6 citedOpen Access
Strain intrinsic properties and environmental constraints together shape Escherichia coli dynamics and diversity over a twenty-year human gut time series
2024· 1 citedOpen Access
Clinical and Bacteriological Specificities of <i>Escherichia coli</i> Bloodstream Infections From Biliary Portal of Entries
The Journal of Infectious Diseases·2024· 2 cited
Predicting phage-bacteria interactions at the strain level from genomes
2023· 19 citedOpen Access
Inter-phylum circulation of a beta-lactamase - encoding gene: a rare but observable event
2023Open Access
Residence-colonization trade-off and niche differentiation enable the coexistence of <i>Escherichia coli</i> phylogroups in healthy humans
2023· 3 citedOpen Access
The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans
PLoS Genetics·2023· 25 citedOpen Access
A Decade-Long Evaluation of Neonatal Septicaemic Escherichia coli: Clonal Lineages, Genomes, and New Delhi Metallo-Beta-Lactamase Variants
Microbiology Spectrum·2023· 15 citedOpen Access
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
Nature Communications·2023· 33 citedOpen Access
Tricycle surveillance in Antananarivo, Madagascar: circulation of both extended-spectrum beta-lactamase producing <i>Escherichia coli</i> strains and plasmids among humans, chickens and the environment
2023· 5 citedOpen Access
The bacterial genetic determinants of <i>Escherichia coli</i> capacity to cause bloodstream infections in humans
2023· 3 citedOpen Access
Acquisition of Enterobacterales carrying the colistin resistance gene<i>mcr</i>following travel to the tropics
Journal of Travel Medicine·2022· 6 cited
High pathogenicity island, <i>aer</i> and <i>sit</i> operons: a “ménage à trois” in <i>Escherichia coli</i> extra-intestinal virulence
2022
Variable effects on virulence of bacteriophage resistance mechanisms in extraintestinal pathogenic <i>Escherichia coli</i>
2022· 1 citedOpen Access
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Frequent Co-authors

Érick Denamur(33), Bertrand Picard(8), Arnold Münnich(7), Judith Melki(7), Stéphane Bonacorsi(7), Édouard Bingen(7), David M. Gordon(7), Catherine Branger(7), Lydie Bürglen(6), Olivier Tenaillon(6), Mathilde Lescat(5), Xavier Nassif(5), Philippe Burlet(4), Louis Viollet(4), Guillaume Arlet(4), P Burlet(4), S. Lefebvre(4), Corinne Cruaud(3), James R. Johnson(3), Eduardo P. C. Rocha(3)