Petr Jurečka

University of Ostrava — Czech Republic

Biochemistry, Genetics and Molecular Biology · Life Sciences

44h-index13.3kcitations114works2.92yr avg
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Research Topics

DNA and Nucleic Acid Chemistry(65), RNA and protein synthesis mechanisms(44), Advanced Chemical Physics Studies(20), Advanced biosensing and bioanalysis techniques(17), Spectroscopy and Quantum Chemical Studies(17)

Publications114 total

A-type helicity controls efficient nonenzymatic template copying of nucleic acids
Chemical Communications·2025Open Access
A-type helicity controls efficient nonenzymatic template copying of nucleic acids
2025Open Access
Why Nondynamic Correlation Matters for <i>ππ</i> Stacking? Lessons from the Benzene Dimer
The Journal of Physical Chemistry Letters·2025
Correction to “Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond”
Journal of Chemical Information and Modeling·2025Open Access
A-type helicity controls efficient nonenzymatic template copying of nucleic acids
2025Open Access
Deciphering Dickerson–Drew DNA Equilibrium beyond the BI/BII DNA Dichotomy by Interpretation of <sup>31</sup>P NMR Parameters
Journal of Chemical Theory and Computation·2025Open Access
Implicit Electronic Polarization via Charge Scaling in Amber OLx Nucleic Acid Force Fields Improves Ion Pairing without Backbone Reparametrization
Journal of Chemical Theory and Computation·2025· 4 citedOpen Access
Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond
Journal of Chemical Information and Modeling·2025· 1 citedOpen Access
Application of <sup><b>19</b></sup>F NMR Spectroscopy for Determining the Absolute Configuration of α-Chiral Amines and Secondary Alcohols Using Trifluoromethylbenzoimidazolylbenzoic Acid
The Journal of Organic Chemistry·2025· 4 citedOpen Access
Amber-OL15-ECC: an Amber force field for nucleic acids with improved ion binding properties
2025· 2 citedOpen Access
Sequence-dependent shape and stiffness of DNA and RNA double helices: hexanucleotide scale and beyond
2025Open Access
Refinement of the Sugar Puckering Torsion Potential in the AMBER DNA Force Field
Journal of Chemical Theory and Computation·2025· 19 citedOpen Access
Refinement of the Sugar Puckering Torsion Potential in the AMBER DNA Force Field
2024· 1 citedOpen Access
Multistate B- to A- transition in protein-DNA Binding – How well is it described by current AMBER force fields?
Journal of Biomolecular Structure and Dynamics·2024· 9 citedOpen Access
Dynamic and Nondynamic Electron Correlation Energy Decomposition Based on the Node of the Hartree–Fock Slater Determinant
Journal of Chemical Theory and Computation·2023· 8 cited
Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition
Journal of Chemical Theory and Computation·2023· 58 citedOpen Access
HeliDye1: helquat fluorogenic probe specific for AT-rich DNA duplexes
2022· 1 citedOpen Access
HeliDye1: helquat fluorogenic probe specific for AT-rich DNA duplexes
2022Open Access
Probabilistic Interpretation of NMR <i>J</i>-Couplings Determines BI–BII State Equilibria in DNA
Journal of Chemical Theory and Computation·2022· 3 cited
Continuous B- to A-Transition in Protein-DNA Binding - How Well Is It Described by Current AMBER Force Fields?
2022Open Access
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Frequent Co-authors

Jiřı́ Šponer(28), Michal Otyepka(25), Pavel Hobza(24), Marie Zgarbová(17), Pavel Banáš(13), Thomas E. Cheatham(7), Arnošt Mládek(6), Miroslav Krepl(5), Daniel Svozil(5), Jiří Černý(4), Michal Pitoňák(4), Martin Pykal(4), Matúš Dubecký(4), Nils G. Walter(3), Rodrigo Galindo‐Murillo(3), František Karlický(3), Modesto Orozco(3), F. Javier Luque(3), Jan Řezáč(3), Haydée Valdés(3)