Rigoberto Hernandez

Johns Hopkins University — United States

Physics and Astronomy · Physical Sciences

38h-index4.6kcitations229works4.02yr avg
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Research Topics

Spectroscopy and Quantum Chemical Studies(73), Advanced Thermodynamics and Statistical Mechanics(36), Advanced Chemical Physics Studies(31), stochastic dynamics and bifurcation(30), Protein Structure and Dynamics(28)

Publications229 total

Final Scientific Report for SPIRAL (9/1/21-8/31/25)
2025Open Access
Thermal Switching in a Ferrocenyl Nanojunction Is Observed in All-Atom Simulations
The Journal of Physical Chemistry Letters·2025
Stoichiometrically-informed symbolic regression for extracting chemical reaction mechanisms from data
arXiv (Cornell University)·2025Open Access
Emergence of Polymer-Networked Nanoparticle Structures as Primitive Neuromorphic Computing States
The Journal of Physical Chemistry A·2025· 1 citedOpen Access
Cytochrome c Facilitates Binding between Lipid Bilayers and Citrate-Coated Gold Nanoparticles in Coarse-Grained Simulations
Journal of Chemical Theory and Computation·2025· 1 cited
Characterizing DNA Origami Nanostructures in TEM Images Using Convolutional Neural Networks
Journal of Chemical Information and Modeling·2025· 2 cited
Gold Nanoparticle Ligand Structure Investigated with Solution NMR: Effects of Ligand Length on Headgroup Dynamics and Ion Penetration
Chemistry of Materials·2025· 1 cited
Semiclassical transition state theory through the lens of the restricted partition function
The Journal of Chemical Physics·2025· 1 cited
In vivo transformations of positively charged nanoparticles alter the formation and function of RuBisCO photosynthetic protein corona
Nature Nanotechnology·2025· 4 cited
The need to implement FAIR principles in biomolecular simulations
Nature Methods·2025· 38 citedOpen Access
Cytochrome C Facilitates Binding Between Lipid Bilayers and Citrate-Coated Gold Nanoparticles in Coarse-Grained Simulations
2025Open Access
DNA Origami Nanostructures Observed in Transmission Electron Microscopy Images can be Characterized through Convolutional Neural Networks
arXiv (Cornell University)·2025Open Access
Structure and Zeta Potential of Gold Nanoparticles with Coronas of Varying Size and Composition
The Journal of Physical Chemistry C·2025· 4 citedOpen Access
Molecular-Level Characterization of Protein-NanoparticleInteractions: Orientation, Deformation and Matrix Effects
2025Open Access
ReLMM: Reinforcement Learning Optimizes Feature Selection in Modeling Materials
Journal of Chemical Information and Modeling·2024· 3 citedOpen Access
Neuromorphic Computing Primitives Using Polymer-Networked Nanoparticles
The Journal of Physical Chemistry C·2024· 2 citedOpen Access
Molecular Electronic Junctions Achieved High Thermal Switch Ratios in Atomistic Simulations
ACS Applied Materials & Interfaces·2024· 1 cited
Nanoscale Iron (Fe<sub>3</sub>O<sub>4</sub>) Surface Charge Controls Fusarium Suppression and Nutrient Accumulation in Tomato (<i>Solanum lycopersicum</i> L.)
ACS Sustainable Chemistry & Engineering·2024· 14 cited
The need to implement FAIR principles in biomolecular simulations
arXiv (Cornell University)·2024· 9 citedOpen Access
Networked Nanoparticle Arrays for Autonomous Computing: (Invited Paper)
2024· 1 cited
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Frequent Co-authors

Catherine J. Murphy(7), Stephen Quirk(6), Thomas Bartsch(6), William H. Miller(5), Ariane Vartanian(5), Joel A. Pedersen(5), Christy L. Haynes(5), Gene Chong(5), T. Uzer(5), Robert J. Hamers(4), Qiang Cui(4), Güngör Özer(4), Galen T. Craven(4), Xi Zhang(4), Andrej Junginger(4), Franz M. Geiger(3), Galya Orr(3), Alexander V. Popov(3), Nicholas C. Handy(2), C. Bradley Moore(2)