Thomas Hamelryck

Biochemistry, Genetics and Molecular Biology · Life Sciences

29h-index9.2kcitations98works0.02yr avg
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Research Topics

Protein Structure and Dynamics(46), Enzyme Structure and Function(25), RNA and protein synthesis mechanisms(14), Glycosylation and Glycoproteins Research(14), Machine Learning in Bioinformatics(10)

Publications98 total

Compact Circulant Layers with Spectral Priors
ArXiv.org·2026Open Access
Compact Circulant Layers with Spectral Priors
arXiv (Cornell University)·2026Open Access
ELBOing Stein: Variational Bayes with Stein Mixture Inference
arXiv (Cornell University)·2024Open Access
AI Implementation and Capability Development in Manufacturing: An Action Research Case
Proceedings of the ... Annual Hawaii International Conference on System Sciences/Proceedings of the Annual Hawaii International Conference on System Sciences·2024Open Access
Abstraction, mimesis and the evolution of deep learning
AI & Society·2023· 1 citedOpen Access
Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder.
PubMed·2022
Mixture Models for Spherical Data with Applications to Protein Bioinformatics
Forum for interdisciplinary mathematics·2022· 1 cited
Persistent Topology of Protein Space
Association for Women in Mathematics series·2022· 3 cited
Time-efficient Bayesian Inference for a (Skewed) Von Mises Distribution on the Torus in a Deep Probabilistic Programming Language
2021· 1 citedOpen Access
Einstein VI: General and Integrated Stein Variational Inference in NumPyro
2021
Mixture models for spherical data with applications to protein bioinformatics
arXiv (Cornell University)·2021Open Access
Bayesian protein superposition using Hamiltonian Monte Carlo
2020
GISA: using Gauss Integrals to identify rare conformations in protein structures
PeerJ·2020· 11 citedOpen Access
Peer Review #2 of "GISA: using Gauss Integrals to identify rare conformations in protein structures (v0.1)"
2020Open Access
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
F1000Research·2020· 16 citedOpen Access
GISA: Using Gauss Integrals to identify rare conformations in protein structures
2019· 1 citedOpen Access
A Probabilistic Programming Approach to Protein Structure Superposition
2019· 4 citedOpen Access
A Probabilistic Programming Approach to Protein Structure Superposition
2019· 1 citedOpen Access
MyPMFs: a simple tool for creating statistical potentials to assess protein structural models
Biochimie·2018· 4 cited
A Generative Angular Model of Protein Structure Evolution
Molecular Biology and Evolution·2017· 25 citedOpen Access
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Frequent Co-authors

Wouter Boomsma(15), Jesper Ferkinghoff‐Borg(14), Lode Wyns(11), Remy Loris(10), Kanti V. Mardia(9), Jes Frellsen(9), Mikael Borg(6), Sandro Bottaro(6), Simon Olsson(6), Julie Bouckaert(5), Christian Andreetta(5), Kristoffer E. Johansson(5), Tim Harder(5), Kresten Lindorff‐Larsen(5), Anders Krogh(4), Minh‐Hoa Dao‐Thi(4), F. Poortmans(4), Martin Paluszewski(4), Anders S. Christensen(4), Jan H. Jensen(4)