Julia Salzman

Stanford University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

25h-index11.1kcitations87works6.62yr avg
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Research Topics

RNA Research and Splicing(26), Cancer-related molecular mechanisms research(16), Circular RNAs in diseases(16), RNA modifications and cancer(14), Single-cell and spatial transcriptomics(12)

Publications87 total

Pretraining and the lasso
Journal of the Royal Statistical Society Series B (Statistical Methodology)·2025· 2 cited
Author Correction: Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Nature Methods·2025· 2 citedOpen Access
sc-SPLASH provides ultra-efficient reference-free discovery in barcoded single-cell sequencing
2024Open Access
Statistical analysis supports pervasive RNA subcellular localization and alternative 3' UTR regulation
eLife·2024· 6 citedOpen Access
STRUCT: a statistical approach to identify RNA secondary structures from raw sequencing data, bypassing multiple sequence alignment
2024
Scalable and unsupervised discovery from raw sequencing reads using SPLASH2
Nature Biotechnology·2024· 11 cited
A reference-free algorithm discovers regulation in the plant transcriptome
2024Open Access
Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung
The Journal of Experimental Medicine·2024· 37 citedOpen Access
Pretraining and the Lasso
arXiv (Cornell University)·2024· 1 citedOpen Access
SPLASH: A statistical, reference-free genomic algorithm unifies biological discovery
Cell·2023· 17 citedOpen Access
DIVE: a reference-free statistical approach to diversity-generating and mobile genetic element discovery
Genome biology·2023· 7 citedOpen Access
SPLASH: a statistical, reference-free genomic algorithm unifies biological discovery
2023Open Access
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Nature Methods·2023· 89 citedOpen Access
Author response: Statistical analysis supports pervasive RNA subcellular localization and alternative 3’ UTR regulation
2023Open Access
Statistical analysis supports pervasive RNA subcellular localization and alternative 3' UTR regulation
eLife·2023· 1 citedOpen Access
Statistical analysis supports pervasive RNA subcellular localization and alternative 3’ UTR regulation
2023· 2 citedOpen Access
SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads
2023· 10 citedOpen Access
A guide to naming eukaryotic circular RNAs
Nature Cell Biology·2023· 105 citedOpen Access
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
2022· 5 citedOpen Access
Statistical analysis supports pervasive RNA subcellular localization and alternative 3’ UTR regulation
2022· 4 citedOpen Access
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Frequent Co-authors

Peter L. Wang(11), Roozbeh Dehghannasiri(11), Patrick O. Brown(6), David T. Pride(6), Rob Bierman(6), Linda Szabo(4), Mark A. Krasnow(4), SoRi Jang(4), Kaitlin Chaung(4), Tavor Z. Baharav(4), Mari Olsen(3), Steven Barrett(3), David A. Relman(3), Refugio Robles‐Sikisaka(3), Melissa Ly(3), Tobias K. Boehm(3), Li Yang(3), Fangqing Zhao(3), Stephen R. Quake(3), Maurizio Morri(3)