Shisong Ma

University of Science and Technology of China — China

Agricultural and Biological Sciences · Life Sciences

24h-index4.5kcitations64works4.62yr avg
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Research Topics

Plant Molecular Biology Research(16), Photosynthetic Processes and Mechanisms(11), Plant Stress Responses and Tolerance(10), Plant nutrient uptake and metabolism(10), Bioinformatics and Genomic Networks(9)

Publications64 total

A gene program dictionary of human cells
2025Open Access
SpacGPA: annotating spatial transcriptomes through <i>de novo</i> interpretable gene programs
2025· 1 citedOpen Access
Comparative spatiotemporal single cell transcriptomes reveal rewiring of pre-existing regulations during emergence of Kranz anatomy in C <sub>4</sub> grasses
2024
6-Phosphogluconate dehydrogenase 2 bridges the OPP and shikimate pathways to enhance aromatic amino acid production in plants
Science China Life Sciences·2024· 7 cited
SingleCellGGM enables gene expression program identification from single-cell transcriptomes and facilitates universal cell label transfer
Cell Reports Methods·2024· 4 citedOpen Access
Single-cell network analysis reveals gene expression programs for Arabidopsis root development and metabolism
Plant Communications·2024· 18 citedOpen Access
Stomatal maturomics: hunting genes regulating guard cell maturation and function formation from single-cell transcriptomes
Journal of genetics and genomics/Journal of Genetics and Genomics·2024· 3 cited
A KDELR-mediated ER-retrieval system modulates mitochondrial functions via the unfolded protein response in fission yeast
Journal of Biological Chemistry·2024· 4 citedOpen Access
Stomatal maturomics: identifying genes regulating guard cell maturation and function formation from single-cell transcriptomes
2023Open Access
Data-driven optimization yielded a highly-efficient CRISPR/Cas9 system for gene editing in Arabidopsis
2023· 6 citedOpen Access
A KDELR-mediated ER retrieval system guides the signaling pathways of UPR and AMPK to maintain cellular homeostasis
2023· 2 citedOpen Access
SingleCellGGM enables gene expression program identification from single-cell transcriptomes and facilitates universal cell label transfer
2023Open Access
Decoding transcriptional regulation via a human gene expression predictor
Journal of genetics and genomics/Journal of Genetics and Genomics·2023· 3 cited
Rice co-expression network analysis identifies gene modules associated with agronomic traits
PLANT PHYSIOLOGY·2022· 25 citedOpen Access
EXPLICIT‐Kinase: A gene expression predictor for dissecting the functions of the <i>Arabidopsis</i> kinome
Journal of Integrative Plant Biology·2022· 9 cited
Dynamic transcriptome profiling reveals essential roles of the receptor tyrosine kinases (RTK) family in feather development of duck
Figshare·2022Open Access
A rice gene expression matrix derived from large-scaled RNA-seq datasets
Figshare·2022Open Access
Arabidopsis MADS‐box factor AGL16 is a negative regulator of plant response to salt stress by downregulating salt‐responsive genes
New Phytologist·2021· 77 cited
EXPLICIT-Kinase: a gene expression predictor for dissecting the functions of the Arabidopsis kinome
2021· 1 citedOpen Access
An Arabidopsis expression predictor enables inference of transcriptional regulators for gene modules
The Plant Journal·2021· 17 citedOpen Access
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Frequent Co-authors

Hans J. Bohnert(15), Savithramma P. Dinesh‐Kumar(13), Qingqiu Gong(7), Haiying Geng(6), Yupu Xu(6), Pinghua Li(5), Yuming Peng(5), M Snyder(4), Yu Zhang(4), Ershang Han(4), Yuzhou Wang(4), Yifan Wang(4), Zhenxing Geng(4), Jiazhen Gong(4), Paul M. Hasegawa(3), Xiaopeng Ma(3), Wanzhu Zuo(3), Yue Qin(3), Tanya M. Quist(2), Ray A. Bressan(2)