Elizabeth J. Denning

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index5.6kcitations24works0.02yr avg
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Research Topics

RNA and protein synthesis mechanisms(9), Protein Structure and Dynamics(7), DNA and Nucleic Acid Chemistry(6), Ion channel regulation and function(4), RNA Research and Splicing(4)

Publications24 total

FOSTA in Legal Context
SSRN Electronic Journal·2020· 6 citedOpen Access
Akeco Structure Library
2015Open Access
Adenylate Kinase Potential Of Mean Force
INFM-OAR (INFN Catania)·2014Open Access
Investigating the Conformational Dynamics of DNA with Lesions through Fluorescence-Based Technniques and Computer Simulations
Biophysical Journal·2014Open Access
Protonation of trimethylamine N-oxide (TMAO) is required for stabilization of RNA tertiary structure
Biophysical Chemistry·2013· 28 citedOpen Access
Influence of lipids on protein-mediated transmembrane transport
Chemistry and Physics of Lipids·2013· 39 cited
Impact of Geometry Optimization on Base–Base Stacking Interaction Energies in the Canonical A- and B-Forms of DNA
The Journal of Physical Chemistry A·2013· 15 citedOpen Access
Impact of Osmolytes on the RNA Hairpin as Studied using Molecular Dynamics Simulations
Biophysical Journal·2013Open Access
Intrinsic Contribution of the 2′-Hydroxyl to RNA Conformational Heterogeneity
Journal of the American Chemical Society·2012· 33 cited
Impact of TMAO on the preQ1 RNA Riboswitch Studied using Molecular Dynamics Simulations
Biophysical Journal·2012Open Access
Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium
Journal of Chemical Theory and Computation·2011· 574 cited
MDAnalysis: A toolkit for the analysis of molecular dynamics simulations
Journal of Computational Chemistry·2011· 4.2k citedOpen Access
Impact of 2′‐hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all‐atom additive force field for RNA
Journal of Computational Chemistry·2011· 420 cited
Impact of Arsenic/Phosphorus Substitution on the Intrinsic Conformational Properties of the Phosphodiester Backbone of DNA Investigated Using ab Initio Quantum Mechanical Calculations
Journal of the American Chemical Society·2011· 21 citedOpen Access
Relationship of the 2′-Hydroxyl Orientation in RNA to Watson-Crick Base Pair Opening
Biophysical Journal·2011Open Access
Computing ensembles of transitions from stable states: Dynamic importance sampling
Journal of Computational Chemistry·2010· 42 citedOpen Access
From the gating charge response to pore domain movement: Initial motions of Kv1.2 dynamics under physiological voltage changes
Molecular Membrane Biology·2009· 14 citedOpen Access
Cooperative nature of gating transitions in K<sup>+</sup> channels as seen from dynamic importance sampling calculations
Proteins Structure Function and Bioinformatics·2009· 13 cited
Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open ↔ Closed Transitions
Journal of Molecular Biology·2009· 166 citedOpen Access
Understanding gating transitions within K+ channels using Dynamic Importance Sampling
Biophysical Journal·2009Open Access
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Frequent Co-authors

Thomas B. Woolf(11), Alexander D. MacKerell(9), Oliver Beckstein(8), Juan R. Perilla(3), Lennart Nilsson(2), U. Deva Priyakumar(2), Paul Crozier(2), Jonathan N. Sachs(2), Naveen Michaud‐Agrawal(1), Katarina Hart(1), Nicolas Foloppe(1), Christopher M. Baker(1), D. Thirumalai(1), Ashley Ringer McDonald(1), Kendra Albert(1), Emily Armbruster(1), Elizabeth Brundige(1), Kimberly Kim(1), Lorelei Lee(1), Lindsey Ruff(1)