J. C. Phillips

Loyola University Chicago — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

73h-index43.9kcitations328works4.32yr avg
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Research Topics

Protein Structure and Dynamics(44), Surface and Thin Film Phenomena(33), Advanced Chemical Physics Studies(32), Parallel Computing and Optimization Techniques(25), Enzyme Structure and Function(23)

Publications328 total

Reconstructing Multiple Basis Material Images From CT Data Collected With a Single KVp Scan
2025
Individualism and Affliction: Cultural Responses to Disease
Humans·2025Open Access
AMBERff at scale: Multimillion-atom simulations with AMBER force fields in NAMD
Biophysical Journal·2024· 3 cited
AMBERff at Scale: Multimillion-Atom Simulations with AMBER Force Fields in NAMD
Journal of Chemical Information and Modeling·2024· 14 citedOpen Access
Electron tomography limited angular image reconstruction using directional-TV
2023
AMBERff at scale: Multimillion-atom simulations with AMBER force fields in NAMD
2023· 3 citedOpen Access
Imagery and Terrain Data Fusion with the Flood Inundation Surface Topology (FIST) Model
2023Open Access
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
The International Journal of High Performance Computing Applications·2022· 87 citedOpen Access
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action
The International Journal of High Performance Computing Applications·2022· 5 citedOpen Access
#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol
2021· 28 citedOpen Access
Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action
2021· 6 citedOpen Access
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics
The International Journal of High Performance Computing Applications·2021· 173 citedOpen Access
AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics
2020· 46 citedOpen Access
The challenges of theory-software translation
F1000Research·2020· 7 citedOpen Access
Scalable molecular dynamics on CPU and GPU architectures with NAMD
The Journal of Chemical Physics·2020· 3.1k citedOpen Access
Peer Review #3 of "Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis (v0.1)"
2020Open Access
Peer Review #3 of "Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis (v0.2)"
2020Open Access
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
Cell·2019· 185 citedOpen Access
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
SSRN Electronic Journal·2019· 6 citedOpen Access
Correction to Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems
Journal of Chemical Theory and Computation·2018· 6 citedOpen Access
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Frequent Co-authors

Klaus Schulten(12), John E. Stone(9), Laxmikant V. Kalé(6), Christophe Chipot(4), David J. Hardy(4), Wei Jiang(4), Benoı̂t Roux(4), K. C. Pandey(4), Emad Tajkhorshid(3), Robert D. Skeel(3), João V. Ribeiro(3), Rafael C. Bernardi(3), Zaida Luthey‐Schulten(3), Leonard Kleinman(3), James C. Gumbart(2), Julio D. C. Maia(2), Marcelo C. R. Melo(2), Brian K. Radak(2), Abhishek Singharoy(2), Aleksei Aksimentiev(2)