Jérémie Denonfoux

Génétique Moléculaire Génomique Microbiologie — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index597citations26works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(11), Microbial Community Ecology and Physiology(7), Microbial bioremediation and biosurfactants(6), Gene expression and cancer classification(4), Gut microbiota and health(3)

Publications26 total

Utilisation couplée de biomarqueurs microbiens moléculaires et isotopiques pour l’évaluation du potentiel de biodégradation de chloroéthènes (PCE, TCE, DCE, CV) dans une nappe polluée
SPIRE - Sciences Po Institutional REpository·2019
Dichloromethane biodegradation in multi-contaminated groundwater: Insights from biomolecular and compound-specific isotope analyses
Water Research·2018· 32 cited
Microbial molecular and isotopic biomarkers for evaluating natural attenuation of chlorinated hydrocarbons in multi-contaminated sites
SPIRE - Sciences Po Institutional REpository·2017
Biodégradation du cis-DCE par la communauté naturelle d'un aquifère contaminé et lien avec l'abondance des gènes fonctionnels
HAL (Le Centre pour la Communication Scientifique Directe)·2017Open Access
An high-throughput molecular tool for highlighting the eukaryotic food microbial communities : application on 12 french cheese varieties
SPIRE - Sciences Po Institutional REpository·2017
Microbial molecular and isotopic biomarkers of chloroethene (PCE, TCE, DCE, CV) biodegradation to evaluate natural attenuation contaminated plumes: which added value?
SPIRE - Sciences Po Institutional REpository·2017
Highlighting the microbial diversity of 12 French cheese varieties
International Journal of Food Microbiology·2016· 145 cited
Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes
PLoS ONE·2016· 48 citedOpen Access
Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning
Methods in molecular biology·2016· 22 cited
Marine microbial community structure assessed from combined metagenomic analysis and ribosomal amplicon deep-sequencing
Marine Biology Research·2015· 9 cited
Probe Design Strategies for Oligonucleotide Microarrays
Methods in molecular biology·2015· 4 cited
Nouveau regard sur la diversité microbienne de fromages français grâce aux outils NGS
HAL (Le Centre pour la Communication Scientifique Directe)·2015
Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils
Environmental Science and Pollution Research·2015· 62 cited
Optimized and standardized 192-plex solution for 16S rDNA gene sequencing on Illumina Miseq platform to assess soil biodiversity
HAL (Le Centre pour la Communication Scientifique Directe)·2014Open Access
Software tools for the selection of oligonucleotide probes for microarrays.
HAL (Le Centre pour la Communication Scientifique Directe)·2014
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification
Database·2014· 24 citedOpen Access
Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database
The Scientific World JOURNAL·2014· 1 citedOpen Access
The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level
PLoS ONE·2013· 51 citedOpen Access
Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration
DNA Research·2013· 51 citedOpen Access
Selection of oligonucleotide probes for high-throughput molecular tools (application for a new gene capture method s development for microbial ecology)
theses.fr (ABES)·2013Open Access
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Frequent Co-authors

Pierre Peyret(15), Nicolas Parisot(14), Éric Dugat‐Bony(12), Éric Peyretaillade(6), Faouzi Jaziri(6), Delphine Boucher(5), Eric Peyretaillade(5), Louis Hermon(5), Jennifer Hellal(5), Catherine Joulian(5), Stéphanie Ferreira(5), Gwenaël Imfeld(5), Stéphanie Ferreira(4), Corinne Biderre‐Petit(4), Antoine Mahul(4), Stéphane Vuilleumier(4), Lucille Garnier(3), Pascal Bonnarme(3), Françoise Irlinger(3), Eric Peyretaillade(3)