Peter K. Koo

Cold Spring Harbor Laboratory — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

23h-index1.7kcitations106works5.02yr avg
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Research Topics

Genomics and Chromatin Dynamics(31), RNA and protein synthesis mechanisms(27), RNA Research and Splicing(19), Genomics and Phylogenetic Studies(18), Protein Structure and Dynamics(11)

Publications106 total

Uncertainty-aware genomic deep learning with knowledge distillation
npj Artificial Intelligence·2026Open Access
eLife Assessment: Generative modeling for RNA splicing prediction and design
2025Open Access
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction
2025· 3 citedOpen Access
eLife Assessment: JAX Animal Behavior System (JABS): A genetics informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse
2025Open Access
Decoding the regulatory genome with large-scale deep learning
Nature Reviews Genetics·2025
eLife Assessment: OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species
2025Open Access
Uncovering the Mechanistic Landscape of Regulatory DNA with Deep Learning
2025· 1 citedOpen Access
eLife Assessment: OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
2025Open Access
Towards interpretable prediction of recurrence risk in breast cancer using pathology foundation models
arXiv (Cornell University)·2025Open Access
eLife Assessment: JAX Animal Behavior System (JABS): A genetics informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse
2025Open Access
eLife Assessment: OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
2025Open Access
Evaluating the representational power of pre-trained DNA language models for regulatory genomics
Genome biology·2025· 14 citedOpen Access
GAME: Genomic API for Model Evaluation
2025Open Access
Machine Learning for Protein Science and Engineering
Cold Spring Harbor Perspectives in Biology·2025· 2 citedOpen Access
eLife Assessment: Semantical and geometrical protein encoding toward enhanced bioactivity and thermostability
2025Open Access
Massive experimental quantification allows interpretable deep learning of protein aggregation
Science Advances·2025· 23 citedOpen Access
eLife Assessment: Generative modeling for RNA splicing predictions and design
2025Open Access
eLife Assessment: Celldetective: an AI-enhanced image analysis tool for unraveling dynamic cell interactions
2025Open Access
eLife Assessment: Semantical and Geometrical Protein Encoding Toward Enhanced Bioactivity and Thermostability
2025Open Access
Probabilistic and machine-learning methods for predicting local rates of transcription elongation from nascent RNA sequencing data
Nucleic Acids Research·2025· 2 citedOpen Access
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Frequent Co-authors

S. G. J. Mochrie(8), Shushan Toneyan(8), Ziqi Tang(8), Sergey Ovchinnikov(7), Justas Dauparas(6), Matt Ploenzke(5), Chandana Rajesh(5), Antonio Majdandzic(4), Nicholas Bhattacharya(4), Roshan Rao(4), Neil Thomas(4), Sean R. Eddy(3), Elizabeth Rhoades(3), Sarah M. Schreiner(2), Yao Zhao(2), Megan C. King(2), Praveen Anand(2), Steffan B. Paul(2), Xiaoli Wu(2), Christopher R. Vakoc(2)