Andrew F. Magee

University of California, Los Angeles — United States

Earth and Planetary Sciences · Physical Sciences

13h-index710citations49works7.72yr avg
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Research Topics

Evolution and Paleontology Studies(18), Genomics and Phylogenetic Studies(14), Genetic diversity and population structure(12), SARS-CoV-2 and COVID-19 Research(7), COVID-19 epidemiological studies(5)

Publications49 total

Genomics reveals zoonotic and sustained human mpox spread in West Africa
Nature·2025· 10 citedOpen Access
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
Cell·2025· 14 citedOpen Access
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans
2024· 6 citedOpen Access
Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa
2024· 7 citedOpen Access
Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations
Systematic Biology·2024· 7 citedOpen Access
Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models
PLoS Computational Biology·2024· 4 citedOpen Access
On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2
Proceedings of the National Academy of Sciences·2024· 6 citedOpen Access
Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models
2023Open Access
Healthcare Professionals’ Experiences of End-of-life Care: A Review of the Literature
Journal of Modern Nursing Practice and Research·2023· 3 cited
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer
Nature Communications·2023· 64 citedOpen Access
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
2023· 12 citedOpen Access
On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2
arXiv (Cornell University)·2023· 2 citedOpen Access
Random-effects substitution models for phylogenetics via scalable gradient approximations
arXiv (Cornell University)·2023Open Access
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer
2023· 19 citedOpen Access
Rapidly changing speciation and extinction rates can be inferred in spite of nonidentifiability
Proceedings of the National Academy of Sciences·2023· 31 citedOpen Access
How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error
Bayesian Analysis·2023· 10 citedOpen Access
CRABS: Congruent rate analyses in birth–death scenarios
Methods in Ecology and Evolution·2022· 24 citedOpen Access
Data Integration in Bayesian Phylogenetics
Annual Review of Statistics and Its Application·2022· 16 citedOpen Access
Author response for "CRABS: Congruent rate analyses in birth–death scenarios"
2022
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
Science·2022· 241 citedOpen Access
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Frequent Co-authors

Marc A. Suchard(18), Sebastian Höhna(12), Tetyana I. Vasylyeva(10), Philippe Lemey(10), Vladimir N. Minin(10), Edyth Parker(9), Bjørn Tore Kopperud(9), Jonathan E. Pekar(8), Andrew Rambaut(8), Joel O. Wertheim(8), Karthik Gangavarapu(7), Mark Zeller(7), Kristian G. Andersen(7), Jennifer L. Havens(6), Michael Worobey(6), Mathieu Fourment(5), Niema Moshiri(4), Katherine Izhikevich(4), Lorena M. Malpica Serrano(4), Alexander Crits‐Christoph(4)