Shankar Subramaniam

University of San Diego — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

76h-index27.7kcitations363works5.72yr avg
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Research Topics

Bioinformatics and Genomic Networks(65), Gene Regulatory Network Analysis(37), Metabolomics and Mass Spectrometry Studies(35), Protein Structure and Dynamics(29), Microbial Metabolic Engineering and Bioproduction(24)

Publications361 total

Immunogenomic diversity of triple-negative breast cancers in obese and non-obese black and white women
npj Breast Cancer·2025Open Access
Integrated multiomics reveals inflammation-driven excessive erythrocytosis in subjects with Monge’s disease
2025
Author Correction: A universal language for finding mass spectrometry data patterns
Nature Methods·2025Open Access
An autoencoder learning method for predicting breast cancer subtypes
PLoS ONE·2025· 1 citedOpen Access
A novel subtyping method for TNBC with implications for prognosis and therapy
2025Open Access
Fundamental Limitations of Foundation Models in Single-Cell Transcriptomics
2025· 3 citedOpen Access
Comparative Analysis of Deep Learning Models for Crop Disease Detection: A Transfer Learning Approach
arXiv (Cornell University)·2025Open Access
Coaching immigrant leaders: motivation to lead and obstacles to change
2025Open Access
Coaching immigrant leaders: motivation to lead and obstacles to change
2025Open Access
A universal language for finding mass spectrometry data patterns
Nature Methods·2025· 36 citedOpen Access
Coaching immigrant leaders: motivation to lead and obstacles to change
2025Open Access
Coaching immigrant leaders: motivation to lead and obstacles to change
2025Open Access
Abstract 6351: Characterizing the spatial heterogeneity of pregnancy-associated triple negative breast cancer
Cancer Research·2025
Computational models for the prediction of yields in the autothermal pyrolysis of biomass
Chemical Engineering Science·2025· 4 cited
Coaching immigrant leaders: motivation to lead and obstacles to change
2025Open Access
Spatially distinct cellular and molecular landscapes define prognosis in triple negative breast cancer
2025· 4 citedOpen Access
Topological Data Analysis Reveals a Subgroup of Luminal B Breast Cancer
IEEE Open Journal of Engineering in Medicine and Biology·2025· 2 citedOpen Access
System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans
Nature Immunology·2025· 37 citedOpen Access
Human iPSC‐derived neuron modeling for the study of early‐onset Alzheimer’s disease
Alzheimer s & Dementia·2024Open Access
Publisher Correction: Generation of ‘semi-guided’ cortical organoids with complex neural oscillations
Nature Protocols·2024· 2 citedOpen Access
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Frequent Co-authors

Eoin Fahy(19), Edward A. Dennis(14), Christopher K. Glass(10), Alfred H. Merrill(9), Robert C. Murphy(9), Christian R.H. Raetz(9), David W. Russell(8), Shakti Gupta(8), Manish Sud(7), Stephen Milne(6), H. Alex Brown(5), David S. Myers(5), Jeffrey G. McDonald(5), Donna Reichart(5), Bali Pulendran(5), Shu Chien(5), Friedrich Spener(4), Oswald Quehenberger(4), Samuel Kelly(4), Ziqiang Guan(4)