Mateusz Marcisz

University of Gdańsk — Poland

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index293citations20works0.02yr avg
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Research Topics

Glycosylation and Glycoproteins Research(11), Proteoglycans and glycosaminoglycans research(10), Protein Structure and Dynamics(6), Cell Adhesion Molecules Research(4), Carbohydrate Chemistry and Synthesis(2)

Publications20 total

Decrypting Glycosaminoglycan “sulfation code” with Computational Approaches
Handbook of experimental pharmacology·2025
Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling
Beilstein Journal of Organic Chemistry·2023· 4 citedOpen Access
Impact of <scp>AlphaFold</scp> on structure prediction of protein complexes: The <scp>CASP15‐CAPRI</scp> experiment
Proteins Structure Function and Bioinformatics·2023· 79 citedOpen Access
Studying specificity in protein-glycosaminoglycan recognition with umbrella sampling
2023Open Access
Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment
2023· 17 citedOpen Access
Solvent Model Benchmark for Molecular Dynamics of Glycosaminoglycans
Journal of Chemical Information and Modeling·2023· 23 citedOpen Access
Repulsive Scaling Replica Exchange Molecular Dynamics in Modeling Protein-Glycosaminoglycan Complexes
Methods in molecular biology·2023· 2 cited
Impact of AlphaFold on structure prediction of protein complexes: The CASP15?CAPRI experiment
Digital Repository at the University of Maryland (University of Maryland College Park)·2023Open Access
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Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
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Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Explicit solvent repulsive scaling replica exchange molecular dynamics (<scp>RS‐REMD</scp>) in molecular modeling of protein‐glycosaminoglycan complexes
Journal of Computational Chemistry·2022· 15 cited
Modeling glycosaminoglycan–protein complexes
Current Opinion in Structural Biology·2022· 34 cited
Advanced Molecular Dynamics Approaches to Model a Tertiary Complex APRIL/TACI with Long Glycosaminoglycans
Biomolecules·2021· 11 citedOpen Access
Modeling Protein–Glycosaminoglycan Complexes: Does the Size Matter?
Journal of Chemical Information and Modeling·2021· 21 citedOpen Access
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
Journal of Molecular Graphics and Modelling·2021· 31 cited
31G3D01 - Computational insights into modeling protein-glycosaminoglycan interactions
2021
Evaluation of replica exchange with repulsive scaling approach for docking glycosaminoglycans
Journal of Computational Chemistry·2021· 17 cited
Further analyses of APRIL/APRIL-receptor/glycosaminoglycan interactions by biochemical assays linked to computational studies
Glycobiology·2021· 11 cited
Computational insights into the role of calcium ions in protein–glycosaminoglycan systems
Physical Chemistry Chemical Physics·2021· 22 cited
Fast and reliable screening assay developed to preselect candidate Soft Rot Pectobacteriaceae Tn5 mutants showing resistance to bacteriophage infection
European Journal of Plant Pathology·2019· 6 citedOpen Access

Frequent Co-authors

Sergey A. Samsonov(15), Martyna Maszota‐Zieleniak(8), Margrethe Gaardløs(6), Małgorzata M. Kogut(5), Martin Zacharias(5), Krzysztof K. Bojarski(4), Annemarie Danielsson(4), Cezary Czaplewski(4), Marco Giulini(3), Nabin Giri(3), Farhan Quadir(3), Eichiro Ichiishi(3), Rituparna Smanta(3), Huanyu Tao(3), Charles Christoffer(3), Hayato Fujuta(3), Tiziana Ricciardelli(3), Melyssa Cheung(3), Ben Shor(3), Tomer Cohen(3)