Nils Gehlenborg

Harvard University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

96h-index105.7kcitations396works4.92yr avg
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Research Topics

Cancer Genomics and Diagnostics(64), Data Visualization and Analytics(60), Bioinformatics and Genomic Networks(42), Cell Image Analysis Techniques(35), Single-cell and spatial transcriptomics(31)

Publications310 total

An integrated view of the structure and function of the human 4D nucleome
Nature·2025· 4 citedOpen Access
Design Space and Declarative Grammar for 3D Genomic Data Visualization
IEEE Transactions on Visualization and Computer Graphics·2025· 1 cited
DQVis Dataset: Natural Language to Biomedical Visualization
2025Open Access
Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools.
PubMed·2025
Can LLMs Bridge Domain and Visualization? A Case Study on High-Dimension Data Visualization in Single-Cell Transcriptomics
IEEE Transactions on Visualization and Computer Graphics·2025
HuBMAP Data Portal: A Resource for Multi-Modal Spatial and Single-Cell Data of Healthy Human Tissues
ArXiv.org·2025· 1 citedOpen Access
Vitessce Link: A Mixed Reality and 2D Display Hybrid Approach for Visual Analysis of 3D Tissue Maps
arXiv (Cornell University)·2025Open Access
Ten simple rules for making biomedical data resources accessible
PLoS Computational Biology·2025Open Access
EasyVitessce: auto-magically adding interactivity to Scverse single-cell and spatial biology plots
arXiv (Cornell University)·2025Open Access
Interactive visualization of kidney micro-compartmental segmentations and associated pathomics on whole slide images.
PubMed·2025Open Access
scellop: A Scalable Redesign of Cell Population Plots for Single-Cell Data
arXiv (Cornell University)·2025Open Access
Safire: Similarity Framework for Visualization Retrieval
2025Open Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
YAC: Bridging Natural Language and Interactive Visual Exploration with Generative AI for Biomedical Data Discovery
arXiv (Cornell University)·2025Open Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
A Generative AI System for Biomedical Data Discovery with Grammar-Based Visualizations
arXiv (Cornell University)·2025Open Access
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks.
PubMed·2025
Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
Ten Simple Rules for Making Biomedical Data Resources Accessible
2025Open Access
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Frequent Co-authors

Gad Getz(43), Juok Cho(39), Scott Frazer(38), David I. Heiman(38), John A. Demchok(37), Yuexin Liu(36), Ina Felau(36), Martin L. Ferguson(36), Sudha Chudamani(36), Michael S. Lawrence(35), Ilya Shmulevich(34), Carolyn M. Hutter(34), Sheila M. Reynolds(33), Thomas J. Giordano(33), Rehan Akbani(33), Vésteinn Thórsson(32), Gordon B. Mills(32), Varsha Dhankani(31), Jean C. Zenklusen(31), Timothy Defreitas(31)