Peter Winter

Broad Institute — United States

Agricultural and Biological Sciences · Life Sciences

52h-index10.8kcitations236works6.92yr avg
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Research Topics

Genetic and Environmental Crop Studies(67), Legume Nitrogen Fixing Symbiosis(32), Agricultural pest management studies(26), Plant Disease Resistance and Genetics(25), Single-cell and spatial transcriptomics(23)

Publications236 total

Beyond alignment: synergistic integration is required for multimodal cell foundation models
2026Open Access
Improving atlas-scale single-cell annotation models with hierarchical cross-entropy loss
Nature Computational Science·2026Open Access
EGFR inhibitor-resistant lung cancers exhibit collateral sensitivity to a covalent, cysteine-independent KEAP1 oligomerizing molecular bridge
Nature Communications·2026Open Access
Supplementary Data from Spatially Resolved Single-Cell Assessment of Pancreatic Cancer Expression Subtypes Reveals Co-expressor Phenotypes and Extensive Intratumoral Heterogeneity
2025Open Access
Supplementary Data from Spatially Resolved Single-Cell Assessment of Pancreatic Cancer Expression Subtypes Reveals Co-expressor Phenotypes and Extensive Intratumoral Heterogeneity
2025Open Access
Adaptive resampling for improved machine learning in imbalanced single-cell datasets
2025Open Access
Abstract B103: Defining cancer cell states that drive inflammation tolerance and KRAS inhibitor resistance in pancreatic cancer
Cancer Research·2025
Abstract A028: Identification of cancer-specific regulators of ΔNp63 through CRISPR-Cas12a screening in pancreatic and head and neck cancers
Cancer Research·2025
Hierarchical cross-entropy loss improves atlas-scale single-cell annotation models
2025· 2 citedOpen Access
Abstract 4399: Systematic interrogation of cell states that drive inflammation tolerance and therapy resistance in cancer
Cancer Research·2025
Artificial variables help to avoid over-clustering in single-cell RNA sequencing
The American Journal of Human Genetics·2025· 1 citedOpen Access
Adapting systems biology to address the complexity of human disease in the single-cell era
Nature Reviews Genetics·2025· 7 cited
Consequences of training data composition for deep learning models in single-cell biology
2025· 2 citedOpen Access
Evaluating the role of pre-training dataset size and diversity on single-cell foundation model performance
2024· 5 citedOpen Access
Supplemental Table 7 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
Supplemental Table 8 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
Supplemental Table 3 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
Supplemental Table 9 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
Supplemental Table 4 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
Supplemental Figures 1-11 from Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer
2024Open Access
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Frequent Co-authors

Günter Kahl(22), Kris C. Wood(9), Björn Rotter(9), Sören Müller(6), Grace R. Anderson(6), Lorin Crawford(5), Alex K. Shalek(5), Bruno Hüttel(5), F. J. Muehlbauer(5), Kevin Lin(5), Rajeev K. Varshney(4), Teresa Millán(4), J. Gil(4), F. Weigand(4), Ina Koch(4), Ralf Horres(4), Pooran M. Gaur(3), J. Rubio(3), Douglas R. Cook(3), Adam M. Zawada(3)