S.K. Burley

Rutgers, The State University of New Jersey — United States

Materials Science · Physical Sciences

105h-index51.7kcitations1.3kworks12.42yr avg
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Research Topics

Enzyme Structure and Function(431), Protein Structure and Dynamics(153), Enzyme Production and Characterization(153), RNA and protein synthesis mechanisms(105), Biochemical and Molecular Research(78)

Publications1.3k total

Multi-scale structural similarity embedding search across entire proteomes
Bioinformatics·2026Open Access
OSTM1 is a ubiquitin E3 ligase that suppresses B-cell malignancy by activating the cAMP/PKA/CREB pathway
2026
ModelCIF Update: Supporting Emerging Classes of Computational Macromolecular Models
Journal of Molecular Biology·2026Open Access
PDX1 phosphorylation at S61 by mTORC1 links nutrient signaling to β cell function and metabolic disease
Cell Reports·2026· 3 citedOpen Access
IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank
Journal of Molecular Biology·2025Open Access
RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models
Nucleic Acids Research·2025· 3 citedOpen Access
Matrix Metalloproteinases as Candidate Antigenic Determinants for Anti‐Tumor Autoantibodies in Human Ovarian Cancer: A Post Hoc Analysis
The FASEB Journal·2025Open Access
Improving Data Representation of Metalloproteins in the Protein Data Bank
Structural Dynamics·2025Open Access
Data Archive Challenge: Transitioning Users to New IDs and Data File Format at the Protein Data Bank
Structural Dynamics·2025Open Access
Streamlining OneDep Depositions of Multiple Related 3DEM Entries with pdb_extract
Structural Dynamics·2025Open Access
<i>Q</i> -score as a reliability measure for protein, nucleic acid and small-molecule atomic coordinate models derived from 3DEM maps
Acta Crystallographica Section D Structural Biology·2025· 3 citedOpen Access
Human protein interactome structure prediction at scale with Boltz-2
2025· 1 citedOpen Access
Conformational ligand-directed targeting of calcium-dependent receptors in acute trauma
Med·2025Open Access
Speeding Up OneDep Depositions of Multiple Related 3DEM Entries with pdb_extract
Microscopy and Microanalysis·2025
MolViewSpec: a Mol* extension for describing and sharing molecular visualizations
Nucleic Acids Research·2025· 2 citedOpen Access
Where and how to house big data on small fragments
Nature Communications·2025· 9 citedOpen Access
From sequence to protein structure and conformational dynamics with artificial intelligence/machine learning
Structural Dynamics·2025· 4 citedOpen Access
Abstract 1156 RCSB Protein Data Bank (PDB): Driving Research and Education Using Experimentally-Determined Structures and Computed Structure Models from Artificial Intelligence/Machine Learning
Journal of Biological Chemistry·2025Open Access
Visualizing and analyzing <scp>3D</scp> biomolecular structures using Mol* at RCSB.org: Influenza A <scp>H5N1</scp> virus proteome case study
Protein Science·2025· 2 citedOpen Access
Multi-scale structural similarity embedding search across entire proteomes
2025Open Access
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Frequent Co-authors

John Westbrook(10), Jasmine Young(9), José M. Duarte(8), Christine Zardecki(8), Helen M. Berman(8), Chunxiao Bi(7), Zukang Feng(7), David S. Goodsell(7), Brian P. Hudson(7), Chenghua Shao(7), Cole Christie(6), Shuchismita Dutta(6), Rachel Kramer Green(6), Robert Lowe(6), Ezra Peisach(6), Alexander Rose(6), Maria Voigt(6), Robert G. Roeder(6), Charmi Bhikadiya(5), Luigi Di Costanzo(5)