André Kahles

SIB Swiss Institute of Bioinformatics — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

49h-index25.6kcitations182works2.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(48), Cancer Genomics and Diagnostics(37), RNA modifications and cancer(32), RNA and protein synthesis mechanisms(20), RNA Research and Splicing(20)

Publications124 total

Rawsamble: Overlapping Raw Nanopore Signals using a Hash-based Seeding Mechanism
Bioinformatics·2026Open Access
Safety of Multi-Omics–Guided Therapy in Advanced Melanoma: A Matched Comparative Cohort Analysis
JCO Precision Oncology·2026Open Access
The chromatin guardian ATRX is a strong prognostic biomarker in melanoma
Scientific Reports·2025Open Access
Regulation of laboratory-developed tests and in-house in vitro diagnostic medical devices in the United States and the European Union—a comparative overview
ESMO Open·2025· 2 citedOpen Access
Efficient and accurate search in petabase-scale sequence repositories
Nature·2025· 4 citedOpen Access
Bacteriophage therapy plus fecal microbiota transplantation to treat recurrent urinary tract infection (rUTI): a case series
2025Open Access
Splicing neoepitope prediction is sensitive to methodological differences
2025· 1 citedOpen Access
Splicing neoepitope prediction is sensitive to methodological differences
Repository for Publications and Research Data (ETH Zurich)·2025Open Access
ESCMID workshop: Artificial intelligence and machine learning in medical microbiology diagnostics
Microbes and Infection·2025· 1 citedOpen Access
ImmunoPepper: extracting personalized peptides from complex splicing graphs
Bioinformatics·2025Open Access
Conference report: The second Bacterial Genome Sequencing Pan-European Network conference
Microbes and Infection·2025Open Access
Histopathology-based protein multiplex generation using deep learning
Nature Machine Intelligence·2025· 5 citedOpen Access
Publisher Correction: Feasibility of multiomics tumor profiling for guiding treatment of melanoma
Nature Medicine·2025Open Access
Feasibility of multiomics tumor profiling for guiding treatment of melanoma
Nature Medicine·2025· 7 citedOpen Access
Author Correction: Genomic basis for RNA alterations in cancer
UNC Libraries·2025Open Access
Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia
Nature Communications·2024· 18 citedOpen Access
Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
ArXiv.org·2024Open Access
Conference report: the first bacterial genome sequencing pan-European network conference
Microbes and Infection·2024· 1 citedOpen Access
Probabilistic pathway-based multimodal factor analysis
Bioinformatics·2024Open Access
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs
Bioinformatics·2024· 3 citedOpen Access
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Frequent Co-authors

Gunnar Rätsch(37), Kjong-Van Lehmann(18), Nuno A. Fonseca(16), Samirkumar B. Amin(11), Abdullah Kahraman(10), Oliver Stegle(9), Chris Sander(9), Esther Rheinbay(9), Julian M. Hess(9), Johanna Bertl(9), Keith A. Boroevich(9), Young-Wook Kim(9), Hidewaki Nakagawa(9), Mark A. Rubin(9), Natalie R. Davidson(9), Jan O. Korbel(9), Harun Mustafa(9), Ximena Bonilla(9), Stefan G. Stark(8), Rory Johnson(8)