Jakob Troidl

Harvard University Press — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

9h-index517citations26works23.22yr avg
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Research Topics

Cell Image Analysis Techniques(11), Advanced Fluorescence Microscopy Techniques(5), Neural dynamics and brain function(5), Data Visualization and Analytics(5), Advanced Electron Microscopy Techniques and Applications(4)

Publications26 total

niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction
Lecture notes in computer science·2026
SynAnno: Interactive Guided Proofreading of Synaptic Annotations
IEEE Transactions on Visualization and Computer Graphics·2025
MoMo - Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes
IEEE Transactions on Visualization and Computer Graphics·2025
EmbryoProfiler: A Visual Clinical Decision Support System for IVF
IEEE Transactions on Visualization and Computer Graphics·2025
SynAnno: Interactive Guided Proofreading of Synaptic Annotations
2025Open Access
MoMo - Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes
2025Open Access
A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain
2025· 8 cited
CAVE: Connectome Annotation Versioning Engine
Nature Methods·2025· 28 citedOpen Access
Addressing persistent challenges in digital image analysis of cancer tissue: resources developed from a hackathon
Molecular Oncology·2025Open Access
Global Neuron Shape Reasoning with Point Affinity Transformers
2024· 7 citedOpen Access
niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction
2024· 1 citedOpen Access
psudo: Exploring Multi‐Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
Computer Graphics Forum·2024· 2 citedOpen Access
A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution
Science·2024· 279 citedOpen Access
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
2024Open Access
ViMO - Visual Analysis of Neuronal Connectivity Motifs
IEEE Transactions on Visualization and Computer Graphics·2023· 13 citedOpen Access
Beyond Generating Code: Evaluating GPT on a Data Visualization Course
2023· 21 cited
CAVE: Connectome Annotation Versioning Engine
2023· 33 citedOpen Access
Addressing persistent challenges in digital image analysis of cancerous tissues
2023· 4 citedOpen Access
Dense 4D nanoscale reconstruction of living brain tissue
Nature Methods·2023· 41 citedOpen Access
Beyond Generating Code: Evaluating GPT on a Data Visualization Course
arXiv (Cornell University)·2023· 5 citedOpen Access
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Frequent Co-authors

Hanspeter Pfister(22), Johanna Beyer(15), Donglai Wei(8), Simon Warchol(7), Zudi Lin(6), Johann G. Danzl(4), Markus Hadwiger(4), Robert Krueger(4), Jeremy L. Muhlich(4), Sven Dorkenwald(3), Forrest Collman(3), Jeff W. Lichtman(3), Jinhan Choi(3), Michał Januszewski(2), Daniel R. Berger(2), Tim Blakely(2), Richard Schalek(2), Shuohong Wang(2), Julian Wagner-Carena(2), David Aley(2)