Ira Cooke

Australian Institute of Tropical Health and Medicine — Australia

Environmental Science · Physical Sciences

28h-index3.4kcitations150works1.52yr avg
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Research Topics

Coral and Marine Ecosystems Studies(46), Genomics and Phylogenetic Studies(18), Cephalopods and Marine Biology(15), Aquaculture Nutrition and Growth(14), Genetic diversity and population structure(13)

Publications150 total

Microbial Metabolism and Disease Virulence Changes Across Day and Night in Coral Black Band Disease Lesions
Environmental Microbiology·2026Open Access
Major transitions in early coral development: novel insights enabled by visualisation of a comprehensive transcriptomic dataset for Acropora millepora
BMC Biology·2026Open Access
Enhanced survival and lower growth in assisted gene flow corals during a marine heatwave driven by local adaptation
2026
Tracking family contributions and family-level survival in silver-lipped pearl oyster Pinctada maxima: Unlocking cost-effective strategies for selective breeding
Aquaculture·2025Open Access
Development and Validation of a Standardised Genomic Tool for Conservation Management of the Koala (Phascolarctos cinereus)
Animals·2025Open Access
Major transitions in early coral development: novel insights enabled by visualisation of a comprehensive transcriptomic dataset for Acropora millepora
2025
Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis)
BMC Genomics·2025· 1 citedOpen Access
Putting Structural Variants Into Practice: The Role of Chromosomal Inversions in the Management of Marine Environments
Molecular Ecology·2025· 4 citedOpen Access
A chromosome-level reference genome for the critically endangered Southern Corroboree frog (Pseudophryne corroboree)
Wellcome Open Research·2025· 1 citedOpen Access
Corrigendum to “Assessing the potential for “assisted gene flow” to enhance heat tolerance of multiple coral genera over three key phenotypic traits” [Biol. Conserv. 306 (2025) 111155]
Biological Conservation·2025Open Access
Assessing the potential for “assisted gene flow” to enhance heat tolerance of multiple coral genera over three key phenotypic traits
Biological Conservation·2025· 6 citedOpen Access
Rapid Evolution in Action: Environmental Filtering Supports Coral Adaptation to a Hot, Acidic, and Deoxygenated Extreme Habitat
Global Change Biology·2025· 3 citedOpen Access
Tracking Family Contributions and Survival in Silver-Lipped Pearl Oyster Pinctada Maxima: Unlocking Cost-Effective Strategies for Selective Breeding
SSRN Electronic Journal·2025Open Access
Circumpolar and Regional Seascape Drivers of Genomic Variation in a Southern Ocean Octopus
Molecular Ecology·2024· 1 citedOpen Access
Harnessing genomic technologies for one health solutions in the tropics
Globalization and Health·2024· 6 citedOpen Access
Chromosome-scale genome assembly of the tropical abalone (Haliotis asinina)
Scientific Data·2024· 4 citedOpen Access
Data from An Accessible Proteogenomics Informatics Resource for Cancer Researchers
2024Open Access
Supplementary Video S1 from An Accessible Proteogenomics Informatics Resource for Cancer Researchers
2024Open Access
Supplementary Video S1 from An Accessible Proteogenomics Informatics Resource for Cancer Researchers
2024Open Access
Chromosomal inversions harbour excess mutational load in the coral, <i>Acropora kenti</i> , on the Great Barrier Reef
Molecular Ecology·2024· 5 citedOpen Access
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Frequent Co-authors

Jan M. Strugnell(19), David J. Miller(12), Sylvain Forêt(11), Hua Ying(10), Nathan E. Hall(8), Mark A. Ragan(7), David G. Bourne(7), Pim Bongaerts(6), Pierre Faou(6), Eldon E. Ball(5), Madeleine J. H. van Oppen(5), Jia Zhang(5), David C. Hayward(5), Aurélie Moya(5), Nicholas A. Robinson(5), Cheong Xin Chan(4), Sara C. Bell(4), Oleg Simakov(4), Brett P. Shiel(4), Brooke L. Whitelaw(4)