Rhys A. Farrer

University of Exeter — United Kingdom

Medicine · Health Sciences

29h-index5.0kcitations80works6.12yr avg
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Research Topics

Fungal Infections and Studies(26), Plant Pathogens and Fungal Diseases(23), Antifungal resistance and susceptibility(22), Genomics and Phylogenetic Studies(14), Amphibian and Reptile Biology(10)

Publications80 total

Emerging terbinafine-resistant Trichophyton indotineae between 2018 and 2023: a multinational genomic epidemiology study
The Lancet Microbe·2026· 1 citedOpen Access
Xenosiderophore transporter gene expression and clade-specific filamentation in Candida auris killifish (Aphanius dispar) infection
Communications Biology·2025· 1 citedOpen Access
The BRCT domain enhances DNA binding and catalytic efficiency of fungal PARPs
2025Open Access
Evolution, structure and function of the biosynthetic gene cluster of myriocin, a potent inhibitory sphingolipid
2025Open Access
DIAMOND2GO: rapid Gene Ontology assignment and enrichment detection for functional genomics
Frontiers in Bioinformatics·2025Open Access
Protein kinase A signaling regulates immune evasion by shaving and concealing fungal β-1,3-glucan
Proceedings of the National Academy of Sciences·2025· 2 citedOpen Access
A Draft Genome Assembly for the Neglected Tropical Fungal Disease Pathogen Emarellia grisea and Comparison to Other Pleosporalean Agents Causing Eumycetoma in Humans
Methods in molecular biology·2025
Genome Assembly, Polishing, and Analysis of the Chytrid Batrachochytrium salamandrivorans
Methods in molecular biology·2025
Seaside to Bedside: Assembly in Research for Emerging Human Fungal Pathogen Candida auris
Methods in molecular biology·2025· 1 cited
Preassembly Read Processing and Quality Control in Fungal Genomes, Exemplified by the Chytrid Batrachochytrium salamandrivorans
Methods in molecular biology·2025
A near-complete telomere-to-telomere genome assembly for <i>Batrachochytrium dendrobatidis</i> GPL JEL423 reveals a larger CBM18 gene family and a smaller M36 metalloprotease gene family than previously recognized
G3 Genes Genomes Genetics·2024· 1 citedOpen Access
Lineage-specific trait variation generates widespread, contemporaneous coexistence and competitive exclusion dynamics in an invasive, multihost wildlife parasite
2024Open Access
Genomic epidemiology of emerging terbinafine-resistant Trichophyton indotineae
2024· 2 citedOpen Access
A near-complete telomere-to-telomere genome assembly for <i>Batrachochytrium dendrobatidis</i> GPL JEL423 reveals a CBM18 gene family expansion and a M36 metalloprotease gene family contraction
2024· 1 citedOpen Access
Xenosiderophore transporter gene expression and clade-specific filamentation in <i>Candida auris</i> killifish infection
2024· 2 citedOpen Access
The thermotolerant Arabian killifish, <i>Aphanius dispar</i> , as a novel infection model for human fungal pathogens
2024· 3 citedOpen Access
DIAMOND2GO: A rapid Gene Ontology assignment and enrichment tool for functional genomics
2024· 3 citedOpen Access
The pathobiology of human fungal infections
Nature Reviews Microbiology·2024· 103 cited
The diverse genomes of Candida auris
The Lancet Microbe·2024· 9 citedOpen Access
Genome variation in the Batrachochytrium pathogens of amphibians
PLoS Pathogens·2024· 3 citedOpen Access
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Frequent Co-authors

Matthew C. Fisher(22), Christina A. Cuomo(16), François Balloux(7), David J. Studholme(7), Johanna Rhodes(6), Trenton W. J. Garner(5), Daniel A. Henk(5), Duncan Wilson(5), Nicolas Helmstetter(5), Andrew A. Cunningham(4), An Martel(4), Frank Pasmans(4), David M. Aanensen(4), Jaime Bosch(4), Anastasia P. Litvintseva(4), Liliana M. Cano(4), Robin C. May(4), Andrew M. Borman(4), Theresa Wacker(4), Hugh Gifford(4)