Joshua Chang Mell

Center for Genomic Science — Italy

Immunology and Microbiology · Life Sciences

25h-index2.6kcitations110works1.32yr avg
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Research Topics

Bacterial Infections and Vaccines(19), Genomics and Phylogenetic Studies(16), Gut microbiota and health(15), RNA and protein synthesis mechanisms(15), Bacterial Genetics and Biotechnology(14)

Publications110 total

Inflammatory microglia signals drive A1-like polarization of astrocytes even in the presence of HIV-1 Tat
Molecular Neurobiology·2025Open Access
A 5′-UTR <i>cis</i> -acting RNA element targeted by RNase III is essential for DNA simple sequence repeat-dependent phase variation in <i>Haemophilus influenzae</i>
Nucleic Acids Research·2025Open Access
MicroTraitLLM: A RAG-based, Microbe-focused LLM for Researchers
2025Open Access
Outer Membrane Vesicles From <i>Bacteroides fragilis</i> Contain Coding and Non‐Coding Small RNA Species That Modulate Inflammatory Signalling in Intestinal Epithelial Cells
Journal of Extracellular Biology·2025Open Access
Epigenetic control of the ferric uptake regulator (Fur) and fumarate nitrate reductase (FNR) master regulatory proteins contributes to <i>Haemophilus influenzae</i> survival during lung infection
mBio·2025· 1 citedOpen Access
Outer membrane vesicles from <i>Bacteroides fragilis</i> contain coding and non-coding small RNA species that modulate inflammatory signaling in intestinal epithelial cells
2025· 2 citedOpen Access
Near full-length HIV-1 provirus analysis for characterizing intactness and variability in the viral reservoir
2025
Characterization of the family-level <i>Borreliaceae</i> pan-genome and development of an episomal typing protocol
mBio·2025· 1 citedOpen Access
Enhancing nucleotide sequence representations in genomic analysis with contrastive optimization
Communications Biology·2025· 5 citedOpen Access
Metronidazole response profiles of Gardnerella species are congruent with phylogenetic and comparative genomic analyses
Genome Medicine·2025· 5 citedOpen Access
Influenza virus-induced type I interferons disrupt alveolar epithelial repair and tight junction integrity in the developing lung
Mucosal Immunology·2025· 7 citedOpen Access
Abstract C003: Outer membrane vesicles from <i>Bacteroides fragilis</i> contain coding and non-coding small RNA species that modulate inflammatory signaling in intestinal epithelial cells
Cancer Research·2024
A two-variant model of SARS-COV-2 transmission: estimating the characteristics of a newly emerging strain
BMC Infectious Diseases·2024Open Access
29 Longitudinal analysis of Mycobacterium avium hominissuis in the cystic fibrosis airway reveals hypermutability as a mechanism for evolutionary adaptation to antibiotic stress
Journal of Cystic Fibrosis·2024
Scorpio : Enhancing Embeddings to Improve Downstream Analysis of DNA sequences
2024· 1 citedOpen Access
Characterization of the family-level Borreliaceae pan-genome and development of an episomal typing protocol
Research Square (Research Square)·2024Open Access
A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment
Scientific Reports·2024Open Access
Long-term Sudan Virus Ebola Survivors Maintain Multiple Antiviral Defense Mechanisms
The Journal of Infectious Diseases·2023· 4 cited
Linked-Pair Long-Read Sequencing Strategy for Targeted Resequencing and Enrichment
2023Open Access
Phylogenomics of nontuberculous mycobacteria respiratory infections in people with cystic fibrosis
Paediatric Respiratory Reviews·2023· 4 citedOpen Access
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Frequent Co-authors

Garth D. Ehrlich(13), Rosemary J. Redfield(12), Rachel Ehrlich(10), Joshua P. Earl(9), Sergey Balashov(8), Sunita Sinha(8), Jarosław E. Król(7), Junkal Garmendia(6), Garth D. Ehrlich(6), Bhaswati Sen(4), Corey Nislow(4), Will Dampier(4), Michael R. Nonnemacher(4), Brian Wigdahl(4), Stephen Woloszynek(4), Gail Rosen(4), Ira M. Hall(3), Archana Bhat(3), Jocelyn Hammond(3), Javier Moleres(3)