Silvia Menin

University of Padua — Italy

Biochemistry, Genetics and Molecular Biology · Life Sciences

6h-index163citations13works3.02yr avg
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Research Topics

Protein Structure and Dynamics(7), Computational Drug Discovery Methods(6), RNA and protein synthesis mechanisms(4), SARS-CoV-2 and COVID-19 Research(3), DNA and Nucleic Acid Chemistry(3)

Publications13 total

Adenosine Receptors in Neuroinflammation and Neurodegeneration
Cells·2025· 1 citedOpen Access
Thermal Titration Molecular Dynamics: The Revenge of the Fragments
Journal of Chemical Information and Modeling·2025· 2 citedOpen Access
Post-Docking Refinement of Peptide or Protein-RNA Complexes Using Thermal Titration Molecular Dynamics (TTMD): A Stability Insight
Journal of Chemical Information and Modeling·2025· 4 citedOpen Access
A comprehensive study of SARS-CoV-2 main protease (Mpro) inhibitor-resistant mutants selected in a VSV-based system
PLoS Pathogens·2024· 10 citedOpen Access
A second life for the crystallographic structure of Berenil-dodecanucleotide complex: a computational revisitation thirty years after its publication
Medicinal Chemistry Research·2024· 1 citedOpen Access
A second life for the crystallographic structure of Berenil-dodecanucleotide complex: a computational revisitation thirty years after its publication
2024Open Access
Thermal titration molecular dynamics (TTMD): shedding light on the stability of RNA-small molecule complexes
Frontiers in Molecular Biosciences·2023· 9 citedOpen Access
A comprehensive study of SARS-CoV-2 main protease (M <sup>pro</sup> ) inhibitor-resistant mutants selected in a VSV-based system
2023· 9 citedOpen Access
TTMD Sheds Light on the Stability of RNA-Small Molecule Complexes
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
A comprehensive study of SARS-CoV-2 main protease (M pro ) inhibitor-resistant mutants selected in a VSV-based system
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Thermal Titration Molecular Dynamics (TTMD): Not Your Usual Post-Docking Refinement
International Journal of Molecular Sciences·2023· 28 citedOpen Access
Qualitative Estimation of Protein–Ligand Complex Stability through Thermal Titration Molecular Dynamics Simulations
Journal of Chemical Information and Modeling·2022· 74 citedOpen Access
Implementing a Scoring Function Based on Interaction Fingerprint for Autogrow4: Protein Kinase CK1δ as a Case Study
Frontiers in Molecular Biosciences·2022· 25 citedOpen Access

Frequent Co-authors

Stefano Moro(13), Matteo Pavan(9), Mattia Sturlese(9), Andrea Dodaro(9), Veronica Salmaso(8), Davide Bassani(5), Gianluca Novello(4), Francesco Costacurta(3), David Bante(3), Helge Schöppe(3), Bernhard Sprenger(3), Seyed Arad Moghadasi(3), Jakob Fleischmann(3), Stefanie Rauch(3), Laura Krismer(3), Anna Sauerwein(3), Anne Heberle(3), Toni Rabensteiner(3), Joses Ho(3), Reuben S. Harris(3)