Nikos Karaiskos

Max Delbrück Center — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

18h-index2.3kcitations61works25.42yr avg
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Research Topics

Single-cell and spatial transcriptomics(27), Acute Kidney Injury Research(10), Algebraic structures and combinatorial models(9), Cell Image Analysis Techniques(8), Nonlinear Waves and Solitons(7)

Publications61 total

Spatiotemporal dynamics of tumor microenvironment remodeling
2025· 2 citedOpen Access
Scalable image-based visualization and alignment of spatial transcriptomics datasets
Cell Systems·2025· 4 citedOpen Access
Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment
Cell Systems·2025· 13 citedOpen Access
Interleukin-12 signaling drives Alzheimer’s disease pathology through disrupting neuronal and oligodendrocyte homeostasis
Nature Aging·2025· 18 citedOpen Access
Protocol for high-resolution 3D spatial transcriptomics using Open-ST
STAR Protocols·2024· 6 citedOpen Access
Challenges and Opportunities in the Clinical Translation of High-Resolution Spatial Transcriptomics
Annual Review of Pathology Mechanisms of Disease·2024· 14 citedOpen Access
Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions the tumor microenvironment
Zenodo (CERN European Organization for Nuclear Research)·2024Open Access
Open-ST: High-resolution spatial transcriptomics in 3D
Cell·2024· 146 citedOpen Access
Open-ST: High-resolution spatial transcriptomics in 3D
2023· 25 citedOpen Access
High-resolution molecular atlas of a lung tumor in 3D
2023· 14 citedOpen Access
Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury
Genome Medicine·2022· 105 citedOpen Access
Optocoder: computational decoding of spatially indexed bead arrays
NAR Genomics and Bioinformatics·2022· 2 citedOpen Access
Optocoder: computational decoding of spatially indexed bead arrays
2022· 1 citedOpen Access
Optocoder: computational decoding of spatially indexed bead arrays
2022Open Access
Optocoder: computational decoding of spatially indexed bead arrays
2022Open Access
Optocoder: computational decoding of spatially indexed bead arrays
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Optocoder: computational decoding of spatially indexed bead arrays
2022Open Access
Additional file 6 of Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury
Figshare·2022Open Access
Additional file 3 of Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury
Figshare·2022Open Access
Additional file 2 of Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury
Figshare·2022Open Access
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Frequent Co-authors

Nikolaus Rajewsky(42), Anastasiya Boltengagen(21), Christine Kocks(18), Christian Hinze(10), Kai M. Schmidt‐Ott(10), Jonathan Alles(9), Janna Leiz(9), Nina Himmerkus(9), Markus Bleich(9), Kai‐Uwe Eckardt(9), Daniel León-Periñán(8), Christopher Mark Skopnik(8), Jan Klocke(8), Jan-Hendrik Hardenberg(8), Helena Stockmann(8), Inka Gotthardt(8), Benedikt Obermayer(8), Laleh Haghverdi(8), Emanuel Wyler(8), Markus Landthaler(8)