Wenjian Ma

Ocean University of China — China

Computer Science · Physical Sciences

6h-index188citations17works3.12yr avg
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Research Topics

Computational Drug Discovery Methods(9), Bioinformatics and Genomic Networks(9), Machine Learning in Bioinformatics(8), Protein Structure and Dynamics(7), Cardiac electrophysiology and arrhythmias(3)

Publications17 total

Protein interaction pattern recognition using heterogeneous semantics mining and hierarchical graph representation
Pattern Recognition·2025
SSPPI: Cross-Modality Enhanced Protein–Protein Interaction Prediction From Sequence and Structure Perspectives
IEEE Transactions on Neural Networks and Learning Systems·2025· 1 cited
SuperEdgeGO: Edge-supervised graph representation learning for enhanced protein function prediction
PLoS Computational Biology·2025· 1 citedOpen Access
Geometric Deep Learning for Protein-Ligand Affinity Prediction with Hybrid Message Passing Strategies
IEEE Journal of Biomedical and Health Informatics·2025· 1 cited
Annotating protein functions via fusing multiple biological modalities
Communications Biology·2024· 7 citedOpen Access
MHAN-DTA: A Multiscale Hybrid Attention Network for Drug-Target Affinity Prediction
IEEE Journal of Biomedical and Health Informatics·2024· 4 cited
<scp>LGS</scp> ‐ <scp>PPIS</scp> : A Local–Global Structural Information Aggregation Framework for Predicting Protein–Protein Interaction Sites
Proteins Structure Function and Bioinformatics·2024· 3 citedOpen Access
Author response for "LGS-PPIS: A Local-Global Structural Information Aggregation Framework for Predicting Protein-Protein Interaction Sites"
2024
Author response for "LGS-PPIS: A Local-Global Structural Information Aggregation Framework for Predicting Protein-Protein Interaction Sites"
2024
CollaPPI: A Collaborative Learning Framework for Predicting Protein-Protein Interactions
IEEE Journal of Biomedical and Health Informatics·2024· 14 cited
HiSIF-DTA: A Hierarchical Semantic Information Fusion Framework for Drug-Target Affinity Prediction
IEEE Journal of Biomedical and Health Informatics·2023· 29 cited
Predicting Drug-Target Affinity by Learning Protein Knowledge From Biological Networks
IEEE Journal of Biomedical and Health Informatics·2023· 39 cited
In silico assessment of pharmacotherapy for carbon monoxide induced arrhythmias in healthy and failing human hearts
Frontiers in Physiology·2022· 2 citedOpen Access
Enhancing Protein Function Prediction Performance by Utilizing AlphaFold-Predicted Protein Structures
Journal of Chemical Information and Modeling·2022· 59 cited
Mechanistic Insights Into Inflammation-Induced Arrhythmias: A Simulation Study
Frontiers in Physiology·2022· 21 citedOpen Access
Proarrhythmic effects of carbon monoxide in human ventricular tissue: insights from computational modeling
Computers in Biology and Medicine·2021· 5 cited
Clinical efficacy of breviscapine plus metoprolol on ventricular arrhythmias in dilated cardiomyopathy patients
Journal of Medical Forum·2012· 2 cited

Frequent Co-authors

Xiangpeng Bi(18), Shugang Zhang(13), Huasen Jiang(8), Zhiqiang Wei(8), Weigang Lu(6), Zhiqiang Wei(3), Zhengli Zhai(3), Shuang-yong Xu(3), Niuwangjie Niu(3), Chengyi Qu(3), Chao Zong(3), Zhen Li(2), Mingjian Jiang(2), Shuang Wang(2), Zhiqiang Wei(2), Jiaren Li(2), Fei Yang(2), Henggui Zhang(1), Nianfan Guo(1), Yuanfei Li(1)