Yihang Shen

Shanghai Jiao Tong University — China

Agricultural and Biological Sciences · Life Sciences

6h-index1.9kcitations20works1.42yr avg
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Research Topics

Chromosomal and Genetic Variations(5), Genomics and Phylogenetic Studies(4), Genomics and Chromatin Dynamics(4), Computational Drug Discovery Methods(3), RNA and protein synthesis mechanisms(3)

Publications20 total

Catalogue of mitotic chromosome-associated small RNAs in mouse 3T3 cell line
Frontiers in Genetics·2025Open Access
Monitoring Nitric Oxide in Trigeminal Neuralgia Rats with a Cerium Single-Atom Nanozyme Electrochemical Biosensor
arXiv (Cornell University)·2025Open Access
DTMol: Pocket-based Molecular Docking using Diffusion Transformers
2025· 1 citedOpen Access
Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants
Algorithms for Molecular Biology·2024· 1 citedOpen Access
Differential diagnosis of pulmonary nodules and prediction of invasive adenocarcinoma using extracellular vesicle DNA
Clinical and Translational Medicine·2024· 2 citedOpen Access
Data-driven AI system for learning how to run transcript assemblers
2024Open Access
In situ tissue profile of rat trigeminal nerve in trigeminal neuralgia using spatial transcriptome sequencing
International Journal of Surgery·2024· 9 citedOpen Access
Graph-Based Genome Inference from Hi-C Data
Lecture notes in computer science·2024
Bayesian Probabilistic Prediction Based Parking Lot Sharing Model for Residential Neighborhoods
Advances in engineering research/Advances in Engineering Research·2024
Improving Hi-C contact matrices using genome graphs
2023· 2 citedOpen Access
De novo design of modular peptide-binding proteins by superhelical matching
Nature·2023· 74 citedOpen Access
Transcriptome characterization of human gingival mesenchymal and periodontal ligament stem cells in response to electronic-cigarettes
Environmental Pollution·2023· 9 cited
Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants
PubMed·2023Open Access
<i>De novo</i> design of modular peptide binding proteins by superhelical matching
2022· 3 citedOpen Access
Computationally Efficient High-Dimensional Bayesian Optimization via Variable Selection
arXiv (Cornell University)·2021· 4 citedOpen Access
Probabilistic method corrects previously uncharacterized Hi-C artifact
2020· 1 citedOpen Access
Topological data analysis reveals principles of chromosome structure throughout cellular differentiation
2019· 6 citedOpen Access
Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation
DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)·2019Open Access
CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction
Nucleic Acids Research·2018· 359 citedOpen Access
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
Nucleic Acids Research·2017· 1.5k citedOpen Access

Frequent Co-authors

Carl Kingsford(9), Yutong Qiu(4), Shiwei Wang(2), Weilin Zhang(2), Luhua Lai(2), Jianfeng Pei(2), Kejia Wu(2), Hua Bai(2), Ya‐Ting Chang(2), Rachel L. Redler(2), Kerrie E. McNally(2), William Sheffler(2), TJ Brunette(2), Derrick R. Hicks(2), Tomos E. Morgan(2), Tim J. Stevens(2), Adam Broerman(2), Inna Goreshnik(2), Michelle DeWitt(2), Cameron M. Chow(2)