Timothy T. Harkins

Nvidia (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

46h-index17.8kcitations113works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(29), Cancer Genomics and Diagnostics(22), Genomics and Rare Diseases(9), Microbial Community Ecology and Physiology(8), Molecular Biology Techniques and Applications(8)

Publications112 total

de novo variant calling identifies cancer mutation signatures in the 1000 Genomes Project
Human Mutation·2022· 17 citedOpen Access
A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study
Briefings in Bioinformatics·2022· 14 citedOpen Access
Abstract 1900: Rapid variant detection and annotations from next generation sequencing data using a GPU accelerated framework
Cancer Research·2022
Abstract 165: Enhanced processing of genomic sequencing data for pediatric cancers: GPUs and machine learning techniques for variant detection
Cancer Research·2021· 4 cited
<i>de novo</i> variant calling identifies cancer mutation profiles in the 1000 Genomes Project
2021· 7 citedOpen Access
Population structure in a continuously distributed coastal marine species, the harbor porpoise, based on microhaplotypes derived from poor‐quality samples
Molecular Ecology·2021· 29 citedOpen Access
Additional file 2 of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Additional file 1 of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Additional file of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Additional file 3 of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Additional file of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Additional file of Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
Figshare·2021Open Access
Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Scientific Reports·2020· 28 citedOpen Access
Sequence and annotation of 42 cannabis genomes reveals extensive copy number variation in cannabinoid synthesis and pathogen resistance genes
2020· 74 citedOpen Access
Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
IRD·2020Open Access
Cryptocurrencies and Zero Mode Wave guides: An unclouded path to a more contiguous Cannabis sativa L. genome assembly.
2018· 23 citedOpen Access
Detection of endometrial precancer by a targeted gynecologic cancer liquid biopsy
Molecular Case Studies·2018· 15 citedOpen Access
ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data
PLoS ONE·2018· 44 citedOpen Access
Applying Precision Medicine to Ovarian Cancer
International Journal of Gynecological Cancer·2018· 12 citedOpen Access
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
Science·2017· 589 citedOpen Access
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Frequent Co-authors

Clarence Lee(13), Pascal Bouffard(8), Karin M. Fredrikson(6), Carlos D. Bustamante(5), Stephan C. Schuster(4), Webb Miller(4), Lynn P. Tomsho(4), Daniela I. Drautz(4), James Knight(4), Vasisht Tadigotla(3), Can Alkan(3), Aakrosh Ratan(3), Eske Willerslev(3), M. Thomas P. Gilbert(3), Michael Packard(3), Andrei Sher(3), Alexei Tikhonov(3), Gerard P. Irzyk(3), Sharon Sheridan(3), Brian Desany(3)