Edward C. Holmes

The University of Sydney — Australia

Medicine · Health Sciences

164h-index135.9kcitations1.2kworks8.12yr avg
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Research Topics

Viral Infections and Vectors(294), Animal Virus Infections Studies(211), Mosquito-borne diseases and control(188), Plant Virus Research Studies(176), Viral gastroenteritis research and epidemiology(144)

Publications1.2k total

Initiation of a coronavirus vaccine library
Vaccine·2025
Genomic Epidemiology of Coxsackievirus A24 Variant During the 2024 Acute Hemorrhagic Conjunctivitis Outbreak in Coastal Kenya
2025Open Access
Reemergence of yellow fever virus in forest and periurban settings in Brazil
Communications Medicine·2025Open Access
Infectome analysis of small mammals in Southern China reveals pathogen ecology and emerging risks
Nature Communications·2025Open Access
The Pandemic Respiratory Virus Epidemiological Surveillance Trial - A Self-swab Surveillance System for Respiratory Viruses Nested Within FluTracking
The Journal of Infectious Diseases·2025Open Access
The risk of human- and mammal-infecting tick-borne viruses in northwest China and adjacent countries
Nature Communications·2025· 1 citedOpen Access
Metatranscriptomic Identification of Trubanaman Virus Sequences in Patient with Encephalitis, Australia
Emerging infectious diseases·2025Open Access
Viral diversity, ecological interconnectedness, and the identification of mammalian chuviruses in Australian microbats
2025Open Access
Low Transmission of the Globally Dominant Recombinant SARS-CoV-2 XFG variant in Kenya, May-July 2025
2025Open Access
Extensive diversity of unusual microorganisms associated with severe pneumonia in kidney transplant recipients
PLoS Pathogens·2025· 1 citedOpen Access
A divergent betacoronavirus with a functional furin cleavage site in South American bats
2025· 1 citedOpen Access
Leveraging metatranscriptomics for the characterisation of bovine blood viromes
Scientific Reports·2025Open Access
Coxsackievirus A24 variant whole genome sequencing from clinical samples using a three overlapping amplicons strategy
Wellcome Open Research·2025· 1 citedOpen Access
Phylogenomics redefines the evolutionary history of mosquitoes
Proceedings of the National Academy of Sciences·2025· 2 citedOpen Access
Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave
BMC Global and Public Health·2025· 2 citedOpen Access
Extrinsic Ecological Factors and Intrinsic Genetic Features are Associated with Ecological Generalism in Pathogenic Tick-Borne Viruses
2025Open Access
Limited effect of short- to mid-term storage conditions on an Australian farmland soil RNA virome
2025Open Access
Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020 - 2025): Clinical Features and Wave Patterns
2025· 1 citedOpen Access
Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance
Cell·2025· 10 cited
Recent advances in the inference of deep viral evolutionary history
Journal of Virology·2025· 1 citedOpen Access
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Frequent Co-authors

Andrew Rambaut(12), Oliver G. Pybus(9), Kristian G. Andersen(6), Robert F. Garry(5), Peter Simmonds(5), Mǎng Shī(4), Shiu‐Wan Chan(4), F. McOmish(4), W. Ian Lipkin(3), Louis du Plessis(3), Xian‐Dan Lin(3), Jun-Hua Tian(3), P.L. Yap(3), Michael Worobey(3), Philippe Lemey(3), Wen Wang(2), Yǒng-Zhèn Zhāng(2), Juan Li(2), Hao Song(2), Yuhai Bi(2)