Anupama Shankar

Centers for Disease Control and Prevention — United States

Immunology and Microbiology · Life Sciences

21h-index1.7kcitations53works1.82yr avg
OpenAlex↗ORCID↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

HIV Research and Treatment(21), HIV/AIDS Research and Interventions(13), Virology and Viral Diseases(10), T-cell and Retrovirus Studies(9), Animal Disease Management and Epidemiology(8)

Publications53 total

Identification of Significant Genomic Changes and Compartmentalization of Simian Foamy Virus in a Human Zoonotically Infected by a Chimpanzee (Pan troglodytes troglodytes)
Viruses·2026Open Access
MicrobeTrace 2.0: the enhanced visualization multitool for molecular epidemiology and bioinformatics
Molecular Biology and Evolution·2025Open Access
High prevalence of simian foamy virus infection of South American Indians
PLoS Pathogens·2025· 2 citedOpen Access
Genome characterization of a simian foamy virus from a human bitten by an African green monkey
Microbiology Resource Announcements·2024· 1 citedOpen Access
High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA
Virus Evolution·2024· 6 citedOpen Access
HantaNet: A New MicrobeTrace Application for Hantavirus Classification, Genomic Surveillance, Epidemiology and Outbreak Investigations
Viruses·2023· 4 citedOpen Access
Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012–2020)
Viruses·2023· 3 citedOpen Access
Correction: Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure
PLoS neglected tropical diseases·2023Open Access
Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012–2020)
Bulgarian Portal for Open Science·2023Open Access
Simulated Study of SARS-CoV-2: Contact Tracing and Potential Transmission Networks
Journal of Student Research·2021Open Access
MicrobeTrace: Retooling molecular epidemiology for rapid public health response
PLoS Computational Biology·2021· 55 citedOpen Access
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
Nucleic Acids Research·2021· 66 citedOpen Access
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure
PLoS neglected tropical diseases·2021· 12 citedOpen Access
HIV Infection Among Partners of HIV-Infected Black Men Who Have Sex with Men — North Carolina, 2011–2013
UNC Libraries·2020· 12 citedOpen Access
MicrobeTrace: Retooling Molecular Epidemiology for Rapid Public Health Response
2020· 6 citedOpen Access
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human
Microbiology Resource Announcements·2020· 3 citedOpen Access
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission
Viruses·2020· 21 citedOpen Access
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes
Viruses·2019· 5 citedOpen Access
Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection
Genome Biology and Evolution·2019· 11 citedOpen Access
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection
2018Open Access
page 1 of 3Next →

Frequent Co-authors

William M. Switzer(41), Walid Heneine(14), Huiyuan Zheng(13), Ellsworth M. Campbell(10), Hongwei Jia(8), Andrew Escayg(6), Philip J. Peters(6), Tony L. Goldberg(6), Nelson Ting(5), Sergey Knyazev(5), Ligia A. Papale(4), Shaohua Tang(4), Roxana Cintrón(4), David Hyeroba(4), Geoffrey Weny(4), Colin A. Chapman(4), Ivailo Alexiev(4), Ivaylo Elenkov(4), Karoni Dutt(3), Alan L. Goldin(3)