Marinka Žitnik

Purdue University West Lafayette — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

49h-index14.9kcitations274works10.42yr avg
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Research Topics

Bioinformatics and Genomic Networks(59), Computational Drug Discovery Methods(52), Biomedical Text Mining and Ontologies(33), Advanced Graph Neural Networks(32), Cell Image Analysis Techniques(27)

Publications272 total

Quantum-machine-assisted drug discovery
npj Drug Discovery.·2026· 3 citedOpen Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
Greater than the Sum of Its Parts: Building Substructure into Protein Encoding Models
arXiv (Cornell University)·2025Open Access
Greater than the Sum of Its Parts: Building Substructure into Protein Encoding Models
ArXiv.org·2025Open Access
DQVis Dataset: Natural Language to Biomedical Visualization
2025Open Access
Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems
arXiv (Cornell University)·2025Open Access
GNN101: Visual Learning of Graph Neural Networks in Your Web Browser
IEEE Transactions on Visualization and Computer Graphics·2025· 1 cited
Protein Structure Tokenization via Geometric Byte Pair Encoding
arXiv (Cornell University)·2025· 1 citedOpen Access
CONCERT predicts niche-aware perturbation responses in spatial transcriptomics
2025· 1 citedOpen Access
Abstract 4366734: Mortality Prediction in Cardiogenic Shock Using a Time Series Machine Learning Foundation Model
Circulation·2025
Structure-Based Drug Design with Geometric Deep Learning: A Comprehensive Survey
ACM Computing Surveys·2025
A global log for medical AI
arXiv (Cornell University)·2025Open Access
Democratizing AI scientists using ToolUniverse
ArXiv.org·2025· 2 citedOpen Access
InfEHR: Clinical phenotype resolution through deep geometric learning on electronic health records
Nature Communications·2025· 3 citedOpen Access
TrialBench: Multi-Modal AI-Ready Datasets for Clinical Trial Prediction
Scientific Data·2025· 1 citedOpen Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
Multimodal AI predicts clinical outcomes of drug combinations from preclinical data.
PubMed·2025· 2 citedOpen Access
YAC: Bridging Natural Language and Interactive Visual Exploration with Generative AI for Biomedical Data Discovery
arXiv (Cornell University)·2025Open Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
Geranium: Multimodal Retrieval of Genomics Data Visualizations
2025Open Access
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Frequent Co-authors

Jure Leskovec(22), Kexin Huang(9), Blaž Zupan(8), Jimeng Sun(6), Tianfan Fu(5), Payal Chandak(4), Connor W. Coley(4), Cao Xiao(4), Wenhao Gao(3), Dylan Bourgeois(3), Jiaxuan You(3), Deisy Morselli Gysi(3), Joseph Loscalzo(3), Michelle M. Li(3), Yusuf Roohani(3), Tomaž Curk(2), Yuanqi Du(2), Anima Anandkumar(2), Monica Agrawal(2), Rex Ying(2)