Walter L. Ruzzo

University of Copenhagen — Denmark

Biochemistry, Genetics and Molecular Biology · Life Sciences

47h-index13.3kcitations139works0.02yr avg
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Research Topics

RNA and protein synthesis mechanisms(27), Genomics and Phylogenetic Studies(25), Algorithms and Data Compression(23), RNA modifications and cancer(20), Complexity and Algorithms in Graphs(16)

Publications139 total

Does rapid sequence divergence preclude RNA structure conservation in vertebrates?
Nucleic Acids Research·2022· 4 citedOpen Access
Polee: RNA-Seq analysis using approximate likelihood
NAR Genomics and Bioinformatics·2021· 1 citedOpen Access
Polee: RNA-Seq analysis using approximate likelihood
2020Open Access
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
Scientific Reports·2020· 83 citedOpen Access
Metabolic Control over mTOR-Dependent Diapause-like State
Developmental Cell·2020· 133 citedOpen Access
Identification and characterization of novel conserved RNA structures in Drosophila
BMC Genomics·2018· 7 citedOpen Access
Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana
Scientific Reports·2018· 23 citedOpen Access
FPGA Acceleration of Short Read Alignment
arXiv (Cornell University)·2018· 5 citedOpen Access
Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis
Cell Reports·2017· 45 citedOpen Access
Associating transcription factors and conserved RNA structures with gene regulation in the human brain
Scientific Reports·2017· 15 citedOpen Access
The identification and functional annotation of RNA structures conserved in vertebrates
Genome Research·2017· 110 citedOpen Access
Isolator: accurate and stable analysis of isoform-level expression in RNA-Seq experiments
2016· 7 citedOpen Access
Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression
2016· 1 citedOpen Access
Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes
Journal of Cell Science·2015· 1 cited
Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes
Proceedings of the National Academy of Sciences·2015· 260 citedOpen Access
Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes
Development·2015· 63 citedOpen Access
Assessment and improvement of Indian‐origin rhesus macaque and <scp>M</scp>auritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data
Journal of Medical Primatology·2014· 4 citedOpen Access
RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
Methods in molecular biology·2014· 47 cited
Concepts and Introduction to RNA Bioinformatics
Methods in molecular biology·2013· 2 cited
De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences
Methods in molecular biology·2013· 16 cited
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Frequent Co-authors

Zizhen Yao(12), Zasha Weinberg(11), Jeffrey E. Barrick(6), Ronald R. Breaker(6), Ka Yee Yeung(5), Robert Gentleman(5), Martin Tompa(5), Daniel C. Jones(5), Michael A. Harrison(4), Jan Gorodkin(4), Jeffrey D. Ullman(3), Stephen J. Tapscott(3), Hannele Ruohola‐Baker(3), Lil Pabon(3), Charles E. Murry(3), Elfar Torarinsson(3), Yi Cao(2), Deepayan Sarkar(2), Abraham Fong(2), Ashok K. Chandra(2)