Urmi Trivedi

Edinburgh Genomics — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

18h-index1.7kcitations58works1.42yr avg
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Research Topics

Genomics and Phylogenetic Studies(13), Wheat and Barley Genetics and Pathology(10), Plant Disease Resistance and Genetics(10), Plant Pathogenic Bacteria Studies(9), Chromosomal and Genetic Variations(8)

Publications58 total

Detecting pathogenic structural variation in families with undiagnosed rare disease in a national genome project
2025Open Access
A workflow for practical training in plant genomics using Oxford Nanopore long‐read sequencing
Plants People Planet·2025Open Access
The reference-free pangenome of <i>Arabidopsis thaliana</i>
2025Open Access
Colora: a Snakemake workflow for complete chromosome-scale <i>de novo</i> genome assembly
Bioinformatics·2025· 1 citedOpen Access
Recent emergence of cephalosporin-resistant <i>Salmonella</i> Typhi in India due to the endemic clone acquiring IncFIB(K) plasmid encoding <i>bla</i> <sub>CTX-M-15</sub> gene
Microbiology Spectrum·2025· 8 citedOpen Access
The ELIXIR-UK training club: Building skills and expanding opportunities
Faculty of 1000 Research Ltd·2025Open Access
Benchmarking of Hi-C tools for scaffolding plant genomes obtained from PacBio HiFi and ONT reads
Frontiers in Bioinformatics·2024· 4 citedOpen Access
Colora: A Snakemake Workflow for Complete Chromosome-scale <i>De Novo</i> Genome Assembly
2024Open Access
A workflow for practical training in ecological genomics using Oxford Nanopore long-read sequencing
2024Open Access
Recent emergence of cephalosporin resistant <i>Salmonella</i> Typhi in India due to the endemic clone acquiring IncFIB(K) plasmid encoding <i>bla</i> <sub>CTX-M-15</sub> gene
2023· 1 citedOpen Access
Benchmarking of Hi-C tools for scaffolding de novo genome assemblies
2023· 2 citedOpen Access
PREVELANCE OF CARBAPENEMASE PRODUCING ORGANISMS AND MOLECULAR RAPID DETECTION OF DIFFERENT GENES FROM VARIOUS CLINICAL ISOLATES IN PATIENTS ADMITTED AT TERTIARY CARE HOSPITALS OF VADODARA
GLOBAL JOURNAL FOR RESEARCH ANALYSIS·2023
The first genome for the Cape Primrose <scp><i>Streptocarpus rexii</i></scp> (Gesneriaceae), a model plant for studying meristem‐driven shoot diversity
Plant Direct·2022· 12 citedOpen Access
Author Correction: A simple and robust real-time qPCR method for the detection of PIK3CA mutations
Scientific Reports·2021· 1 citedOpen Access
PromethION Sequencing and Assembly of the Genome of <i>Micropoecilia picta</i>, a Fish with a Highly Degenerated Y Chromosome
Genome Biology and Evolution·2021· 7 citedOpen Access
Faecal metabarcoding reveals pervasive long-distance impacts of garden bird feeding
Proceedings of the Royal Society B Biological Sciences·2021· 25 citedOpen Access
Hybrid assembly of an agricultural slurry virome reveals a diverse and stable community with the potential to alter the metabolism and virulence of veterinary pathogens
Microbiome·2021· 312 citedOpen Access
Faecal metabarcoding reveals pervasive long-distance impacts of garden bird feeding
2021· 3 citedOpen Access
Additional file 2 of Hybrid assembly of an agricultural slurry virome reveals a diverse and stable community with the potential to alter the metabolism and virulence of veterinary pathogens
Figshare·2021Open Access
A telomere-to-telomere assembly of <i>Oscheius tipulae</i> and the evolution of rhabditid nematode chromosomes
G3 Genes Genomes Genetics·2020· 83 citedOpen Access
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Frequent Co-authors

Mark Blaxter(22), Karim Gharbi(8), Michael G. Ritchie(8), Graham McGrann(8), Ambrose Andongabo(8), Francois Dussart(8), Maciej Kaczmarek(8), Ashleigh Mackenzie(8), James Fountaine(8), Jeanette Taylor(8), Linda Paterson(8), Kalina Gorniak(8), F. J. Burnett(8), K. Kanyuka(8), K. E. Hammond‐Kosack(8), J. J. Rudd(8), N. D. Havis(8), Marian Thomson(7), Elisabet SjĂśkvist(6), Bart A. Pannebakker(5)