Alla Gagarinova

University of New Brunswick — Canada

Biochemistry, Genetics and Molecular Biology · Life Sciences

17h-index1.6kcitations39works3.02yr avg
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Research Topics

Bacterial Genetics and Biotechnology(18), RNA and protein synthesis mechanisms(9), Microbial Metabolic Engineering and Bioproduction(8), Evolution and Genetic Dynamics(7), Genomics and Phylogenetic Studies(6)

Publications39 total

Human protein interaction networks of ancestral and variant SARS-CoV-2 in organ-specific cells and bodily fluids
Nature Communications·2025· 3 citedOpen Access
Co-fractionation–mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brain
Nature Protocols·2023· 10 cited
Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli
Nature Communications·2022· 13 citedOpen Access
HPiP: an R/Bioconductor package for predicting host–pathogen protein–protein interactions from protein sequences using ensemble machine learning approach
Bioinformatics Advances·2022· 7 citedOpen Access
Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections
Frontiers in Genetics·2021· 21 citedOpen Access
Structural and functional study of <i>Legionella pneumophila</i> effector RavA
Protein Science·2021· 9 citedOpen Access
Structural biology of the invasion arsenal of Gram‐negative bacterial pathogens
FEBS Journal·2021· 8 citedOpen Access
YhcB (DUF1043), a novel cell division protein conserved across gamma-proteobacteria
2021· 1 citedOpen Access
Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks
Methods in molecular biology·2021
ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis
Journal of Biological Chemistry·2021· 14 citedOpen Access
Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action
Nature Communications·2019· 56 citedOpen Access
Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis
iScience·2019· 57 citedOpen Access
A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative <i>Escherichia coli</i>
Bioinformatics·2019· 3 citedOpen Access
Chemical-genetic profiling reveals cross-resistance and collateral sensitivity between antimicrobial peptides
2019· 3 citedOpen Access
Structure of the HAD domain of effector protein Lem4 (lpg1101) from Legionella pneumophila (inactive mutant)
Journal of Biological Chemistry·2018
Legionella pneumophila effector Lem4 is a membrane-associated protein tyrosine phosphatase
Journal of Biological Chemistry·2018· 16 citedOpen Access
Global landscape of cell envelope protein complexes in Escherichia coli
Nature Biotechnology·2017· 144 citedOpen Access
Insights from protein-protein interaction studies on bacterial pathogenesis
Expert Review of Proteomics·2017· 13 cited
Insights from protein-protein interaction studies on bacterial pathogenesis
Figshare·2017Open Access
Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery
Cell Reports·2016· 52 citedOpen Access
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Frequent Co-authors

Mohan Babu(32), Sadhna Phanse(21), Andrew Emili(15), Jack Greenblatt(8), Hiroyuki Aoki(8), Ashkan Golshani(8), Ali Hosseinnia(8), James Vlasblom(6), Matthew Jessulat(6), Ashwani Kumar(5), Viktor Deineko(5), Mohamed Taha Moutaoufik(5), Matineh Rahmatbakhsh(5), Mirosław Cygler(5), Oxana Pogoutse(4), Zoran Minić(4), John Parkinson(4), Mara Zilocchi(4), Khaled A. Aly(4), Natalia Beloglazova(3)