David Haussler

University of California, Santa Cruz — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

174h-index256.5kcitations720works5.12yr avg
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Research Topics

Genomics and Phylogenetic Studies(192), RNA and protein synthesis mechanisms(96), Cancer Genomics and Diagnostics(96), Chromosomal and Genetic Variations(92), Machine Learning and Algorithms(62)

Publications623 total

Microscale maps of bursting dynamics across human hippocampal slices from patients with epilepsy
Journal of Neurophysiology·2025Open Access
The UCSC Genome Browser database: 2026 update
Nucleic Acids Research·2025· 11 citedOpen Access
A Modular Platform for Automated Organoid Culture and Longitudinal Imaging
2025Open Access
Incubator-Free Organoid Culture in a Sealed Recirculatory System
2025· 2 citedOpen Access
The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science
UNC Libraries·2025Open Access
Microfluidic Topography Biases Neural Organoid Morphogenesis
2025
Weighted Graph for Longitudinal Tracking of Neurons in Cortical Organoids on a High-Density Microelectrode Array
2025
A feedback-driven brain organoid platform enables automated maintenance and high-resolution neural activity monitoring
Internet of Things·2025· 6 citedOpen Access
Consistently processed RNA sequencing data from 50 sources enriched for pediatric data
Scientific Data·2025· 1 citedOpen Access
Self-Organizing Neural Networks in Organoids Reveal Principles of Forebrain Circuit Assembly
2025· 7 citedOpen Access
Protocol for deep-learning-driven cell type label transfer in single-cell RNA sequencing data
STAR Protocols·2025· 1 citedOpen Access
Comparative analysis of RNA expression in a single institution cohort of pediatric cancer patients
npj Precision Oncology·2025· 2 citedOpen Access
Microscope Upcycling: Transforming legacy microscopes into automated cloud-integrated imaging systems
HardwareX·2025Open Access
HIPPIE: A Multimodal Deep Learning Model for Electrophysiological Classification of Neurons
2025· 2 citedOpen Access
1166 Optogenetic Modulation of Network Activity in Human Hippocampus
Neurosurgery·2025
Goal-Directed Learning in Cortical Organoids
2024· 8 citedOpen Access
RT-Sort: An action potential propagation-based algorithm for real time spike detection and sorting with millisecond latencies
PLoS ONE·2024· 4 citedOpen Access
Multimodal evaluation of network activity and optogenetic interventions in human hippocampal slices
Nature Neuroscience·2024· 32 citedOpen Access
Multiscale Cloud-Based Pipeline for Neuronal Electrophysiology Analysis and Visualization
2024· 5 citedOpen Access
Pathological microcircuits and epileptiform events in patient hippocampal slices
2024· 1 citedOpen Access
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Frequent Co-authors

Mark Diekhans(10), Angie S. Hinrichs(10), W. James Kent(10), Kate R. Rosenbloom(9), Hiram Clawson(9), Brian J. Raney(8), Ann S. Zweig(7), Robert M. Kuhn(7), W. James Kent(7), Robert Baertsch(6), Richard A. Gibbs(6), Marco A. Marra(6), Rachel Harte(6), Webb Miller(6), Donna Karolchik(6), Brian T. Lee(6), Galt P Barber(6), Mary J. Goldman(5), Adam Siepel(5), Timothy R. Dreszer(5)