Guoli Ji

Xiamen University — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

18h-index998citations81works2.02yr avg
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Research Topics

RNA Research and Splicing(20), Gene expression and cancer classification(18), Single-cell and spatial transcriptomics(17), RNA modifications and cancer(12), Genomics and Phylogenetic Studies(11)

Publications81 total

PLS-based gene subset augmentation and tumor-specific gene identification
Computers in Biology and Medicine·2024· 2 citedOpen Access
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies
Genomics Proteomics & Bioinformatics·2023· 9 citedOpen Access
scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data
International Journal of Molecular Sciences·2022Open Access
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies
2022· 1 citedOpen Access
Shared and Cell-Type-Specific Gene Expression Patterns Associated With Autism Revealed by Integrative Regularized Non-Negative Matrix Factorization
Frontiers in Genetics·2022Open Access
scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data
Briefings in Bioinformatics·2021· 25 cited
scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution
Nucleic Acids Research·2021· 23 citedOpen Access
scLINE: A multi-network integration framework based on network embedding for representation of single-cell RNA-seq data
Journal of Biomedical Informatics·2021· 9 cited
scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
Gene Module Analysis Reveals Cell-Type Specificity and Potential Target Genes in Autism’s Pathogenesis
Biomedicines·2021· 16 citedOpen Access
Gene module analysis reveals cell-type specificity and potential target genes in autism's pathogenesis
2021· 1 citedOpen Access
Gene module analysis reveals cell-type specificity and potential target genes in autism's pathogenesis
2021Open Access
Gene module analysis reveals cell-type specificity and potential target genes in autism's pathogenesis
2021Open Access
Cell Type-Specific Predictive Models Perform Prioritization of Genes and Gene Sets Associated With Autism
Frontiers in Genetics·2021· 17 citedOpen Access
Cell Type-specific Predictive Models Perform Prioritization of Genes and Gene Sets Associated with Autism
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
Learning association for single-cell transcriptomics by integrating profiling of gene expression and alternative polyadenylation
2021· 1 citedOpen Access
Additional file 8 of An analytical method for the identification of cell type-specific disease gene modules
Figshare·2021Open Access
PIAS: an interactive visualization platform for integrative analysis of multi-source single-cell RNA-seq datasets
Figshare·2021Open Access
Additional file 1 of An analytical method for the identification of cell type-specific disease gene modules
Figshare·2021Open Access
Additional file 4 of An analytical method for the identification of cell type-specific disease gene modules
Figshare·2021Open Access
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Frequent Co-authors

Xiaohui Wu(16), Zijiang Yang(11), Wenbin Ye(10), Congting Ye(8), Qingshun Quinn Li(8), Wenjie You(6), Mingshun Yuan(5), Jinting Guan(5), Lishan Ye(5), Sheng Zu Zhu(4), Zhou Sun(4), Yingjia Shen(3), Chun Liang(3), Yucai Zhu(3), Jiangyin Huang(3), Shuchao Li(3), Moliang Chen(2), Qianmin Lin(2), Yaru Su(2), Qingyang Yin(2)