Baldo Oliva

Universitat Pompeu Fabra — Spain

Biochemistry, Genetics and Molecular Biology · Life Sciences

36h-index3.9kcitations136works1.62yr avg
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Research Topics

Bioinformatics and Genomic Networks(47), Computational Drug Discovery Methods(41), Protein Structure and Dynamics(29), RNA and protein synthesis mechanisms(17), Machine Learning in Bioinformatics(17)

Publications134 total

ModCRElib: A standalone package to model <i>cis</i> -regulatory elements
2026Open Access
Continuum architecture dynamics of vesicle tethering in exocytosis
Cell·2026Open Access
eIF2Bε phosphorylation activates integrated stress response-mediated protein translation and links stress signalling to amyloidogenesis in Alzheimer’s disease
2025Open Access
Nrm1 is a bistable switch connecting cell cycle progression to transcriptional control
EMBO Reports·2025· 1 citedOpen Access
How did we get there? AI applications to biological networks and sequences
Computers in Biology and Medicine·2025· 5 citedOpen Access
SNPeBoT: a tool for predicting transcription factor allele specific binding
BMC Bioinformatics·2025· 1 citedOpen Access
Continuum architecture dynamics of vesicle tethering in exocytosis
2025· 1 citedOpen Access
Integration of expression datasets to identify biomarkers for accurate Gleason scoring in Prostate Cancer
2024Open Access
Structure-based learning to predict and model protein–DNA interactions and transcription-factor co-operativity in <i>cis</i>-regulatory elements
NAR Genomics and Bioinformatics·2024· 8 citedOpen Access
PyF2F: A robust and simplified fluorophore-to-fluorophore distance measurement tool for Protein interactions from Imaging Complexes after Translocation experiments
2024· 1 citedOpen Access
PyF2F: a robust and simplified fluorophore-to-fluorophore distance measurement tool for Protein interactions from Imaging Complexes after Translocation experiments
NAR Genomics and Bioinformatics·2024· 1 citedOpen Access
SBILib: a handle for protein modeling and engineering
Bioinformatics·2023· 5 citedOpen Access
Revealing Shared Proteins and Pathways in Cardiovascular and Cognitive Diseases Using Protein Interaction Network Analysis
2023· 2 citedOpen Access
A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
CPT Pharmacometrics & Systems Pharmacology·2023· 6 citedOpen Access
CM2D3: Furnishing the Human Interactome with Structural Models of Protein Complexes Derived by Comparative Modeling and Docking
Journal of Molecular Biology·2023· 5 citedOpen Access
Theoretical 3D Modeling of NLRP3 Inflammasome Complex
Methods in molecular biology·2023
Live‐Cell Structural Biology to Solve Molecular Mechanisms: Structural Dynamics in the Exocyst Function
2022
The usage of transcriptomics datasets as sources of Real-World Data for clinical trialling
2022· 2 citedOpen Access
Corrigendum to “An inhibitor of interaction between the transcription factor NRF2 and the E3 ubiquitin ligase adapter β-TrCP delivers anti-inflammatory responses in mouse liver” [Redox Biol. 55 (2022) 102396/PMID: 35839629]
Redox Biology·2022· 1 citedOpen Access
Prediction of Adverse Drug Reaction Linked to Protein Targets Using Network-Based Information and Machine Learning
Frontiers in Bioinformatics·2022· 10 citedOpen Access
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Frequent Co-authors

Javier Garcı́a-Garcı́a(14), Emre Güney(13), Jaume Bonet(13), Ramón Aragüés(8), Narcís Fernández‐Fuentes(8), Joan Planas-Iglesias(6), Àngels Sierra(6), Oriol Fornés(5), Manuel Alejandro Marín-López(5), Joaquim Aguirre‐Plans(5), Daniel Aguilar(4), Ferrán Sanz(4), Laura I. Furlong(4), Rebeca Sanz‐Pamplona(4), Berta Martín(4), Janet Piñero(3), Antonio Cuadrado(2), Ana I. Rojo(2), Harald Schmidt(2), Roni H. G. Wright(2)