H. J. C. Berendsen

University of Groningen — Netherlands

Biochemistry, Genetics and Molecular Biology · Life Sciences

36h-index8.6kcitations90works0.02yr avg
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Research Topics

Protein Structure and Dynamics(26), Spectroscopy and Quantum Chemical Studies(21), Advanced Thermodynamics and Statistical Mechanics(17), Phase Equilibria and Thermodynamics(12), Enzyme Structure and Function(12)

Publications89 total

Benchmark of Schemes for Multiscale Molecular Dynamics Simulations
Journal of Chemical Theory and Computation·2015· 27 citedOpen Access
Stochastic Dynamics with Correct Sampling for Constrained Systems
Journal of Chemical Theory and Computation·2014· 12 cited
MPI Parallelization of Innovative DPD Thermostats
2013
Efficient Algorithms for Langevin and DPD Dynamics
Journal of Chemical Theory and Computation·2012· 328 citedOpen Access
Methods for Multiscale Modeling of Membranes
Elsevier eBooks·2012· 4 cited
Completion and refinement of 3‐D homology models with restricted molecular dynamics: Application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis
Proteins Structure Function and Bioinformatics·2002· 47 cited
Interparticle Forces for Dem by Md Simulations
2002
Density functional theory and molecular dynamics results for copper proteins
University of Groningen research database (University of Groningen / Centre for Information Technology)·2001· 6 cited
Slow events in complex systems: potentials of mean form and the Smoluchokowski limit in biological systems
Data Archiving and Networked Services (DANS)·2001
Properties of Adsorbed Water Layers and the Effect of Adsorbed Layers on Interparticle Forces by Liquid Bridging
Langmuir·2000· 65 cited
Developing a force field for metallo proteins
Journal of Molecular Graphics and Modelling·2000
Collective protein dynamics in relation to function
Current Opinion in Structural Biology·2000· 427 cited
Derivation of thermal equations of state for quantum systems using the quasi-Gaussian entropy theory
The Journal of Chemical Physics·1999· 7 citedOpen Access
Derivation of a general fluid equation of state based on the quasi-Gaussian entropy theory: application to the Lennard-Jones fluid
Molecular Physics·1999· 19 cited
A kinetic model for the internal motions of proteins: Diffusion between multiple harmonic wells
Proteins Structure Function and Bioinformatics·1999· 69 citedOpen Access
Alamethicin: Molecular dynamics simulations of a channel- forming peptide : Molecular dynamics simulations of a channel-forming peptide
Data Archiving and Networked Services (DANS)·1999
The use of molecular dynamics in De Novo design: application to a transmembrane four-helix coiled coil : application to a transmembrane four-helix coiled coil
Data Archiving and Networked Services (DANS)·1999
Alamethicin: Molecular dynamics simulations of a channel- forming peptide
Biophysical Journal·1999· 1 cited
Application of the quasi-Gaussian entropy theory to molecular dynamics simulations of Lennard-Jones fluids
The Journal of Chemical Physics·1998· 21 citedOpen Access
On the use of the quasi-Gaussian entropy theory in noncanonical ensembles. II. Prediction of density dependence of thermodynamic properties
The Journal of Chemical Physics·1998· 11 citedOpen Access
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Frequent Co-authors

Andrea Amadei(13), Wilfred F. van Gunsteren(9), M. E. F. Apol(7), Daan M. F. van Aalten(6), ‪Siewert J. Marrink(4), Bert L. de Groot(4), Alfredo Di Nola(4), Gert Vriend(3), C. Migchelsen(3), J. de Vlieg(3), P. van der Ploeg(2), Nicolae Goga(2), Andrzej J. Rzepiela(2), Alex H. de Vries(2), Antonius B. M. Linssen(2), Ruud M. Scheek(2), C.P.G.M. de Groot(2), Olle Edholm(2), Jan F. M. Post(2), R. Mathur-De Vré(2)