Pramila Ariyaratne

Biochemistry, Genetics and Molecular Biology · Life Sciences

18h-index5.4kcitations29works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(8), Genomics and Chromatin Dynamics(6), Chromosomal and Genetic Variations(5), Genomic variations and chromosomal abnormalities(4), RNA Research and Splicing(3)

Publications29 total

987. Identification of Fungal Pathogens In Formalin-Fixed Paraffin-Embedded (FFPE) Tissues by Targeted Next-Generation Sequencing (NGS) Technology
Open Forum Infectious Diseases·2023Open Access
P2.05-02 MAPK1/MAPK3 Mutations Enhance Immunotherapy Efficacy in Lung Squamous Cell Carcinoma (LSCC): Results of the SQUINT Trial
Journal of Thoracic Oncology·2023Open Access
314P Comprehensive microbial signatures and genomic profiling in tumour samples using next generation sequencing
Annals of Oncology·2020
316P Implementation of Vela Analytics to accelerate comprehensive interpretation and reporting of next-generation sequencing-based oncology testing in clinical diagnostic laboratories
Annals of Oncology·2020
Comparison of an <i>In Vitro</i> Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing
Journal of Clinical Microbiology·2018· 85 citedOpen Access
Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line
Cell Systems·2017· 107 citedOpen Access
Ion Torrent next generation sequencing for accurate genotyping and detection of resistance associated variants in HCV and HIV
Journal of Clinical Virology·2016· 1 cited
Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis
PLoS ONE·2015· 21 citedOpen Access
Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity
Cell Reports·2015· 137 citedOpen Access
Detection of Chromosomal Breakpoints in Patients with Developmental Delay and Speech Disorders
PLoS ONE·2014· 89 citedOpen Access
Whole-genome reconstruction and mutational signatures in gastric cancer
Genome biology·2012· 144 citedOpen Access
Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons
PLoS ONE·2012· 15 citedOpen Access
Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma
Nature Genetics·2012· 982 cited
Abstract 1911: A common BIM polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer
Cancer Research·2012
A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer
Nature Medicine·2012· 551 cited
A Common Deletion Polymorphism in the BIM Gene Contributes to Intrinsic Imatinib Resistance in Chronic Myelogenous Leukemia
Blood·2011· 1 cited
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Genome Research·2011· 535 citedOpen Access
Transcriptional consequences of genomic structural aberrations in breast cancer
Genome Research·2011· 87 citedOpen Access
Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
Genome Research·2011· 78 citedOpen Access
PE-Assembler: <i>de novo</i> assembler using short paired-end reads
Bioinformatics·2010· 47 citedOpen Access
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Frequent Co-authors

Wing‐Kin Sung(22), Yijun Ruan(18), Xiaoan Ruan(12), Axel M. Hillmer(9), Audrey S.M. Teo(8), Xing Yi Woo(8), Niranjan Nagarajan(8), Atif Shahab(8), Guillaume Bourque(7), Valère Cacheux-Rataboul(7), Edison T. Liu(6), Wah Heng Lee(6), Wan Ting Poh(6), Patrick Tan(6), Zhenshui Zhang(5), Melissa J. Fullwood(4), Xu Han(4), Hervé Thoreau(4), Chia‐Lin Wei(4), Fabianus Hendriyan Mulawadi(4)