Shaokai Wang

Central South University — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

5h-index105citations26works1.72yr avg
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Research Topics

Gene expression and cancer classification(5), Single-cell and spatial transcriptomics(5), Genomics and Phylogenetic Studies(4), Genomics and Chromatin Dynamics(3), vaccines and immunoinformatics approaches(3)

Publications26 total

SAGE: Spatially Aware Gene Selection and Dual‐View Embedding Fusion for Domain Identification in Spatial Transcriptomics
Advanced Science·2026Open Access
Geological Safety Evaluation of Urban Areas in Northeastern Chongqing Using a Multi-Source Logistic Regression Model
Sustainability·2026Open Access
Unimeth: A unified transformer framework for accurate DNA methylation detection from nanopore reads
2025
MMFF-DDI: A Multi-Modal Fusion Framework for Drug-Drug Interaction Event Prediction With Contrastive Learning
IEEE Transactions on Computational Biology and Bioinformatics·2025
ChromNet: A Multi‐Task Learning Framework for Cross‐Cell Type Prediction of 3D Chromatin Interactions Using Epigenetic Signals
Advanced Science·2025Open Access
Application of Moving Target Detection in Landslide Warning Based on OpenCV
Advances in Research·2025Open Access
TopoLa: A Universal Framework to Enhance Cell Representations for Single-cell and Spatial Omics through Topology-encoded Latent Hyperbolic Geometry
2025Open Access
Author Correction: Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D
Nature Structural & Molecular Biology·2025Open Access
Inference and visualization of multi-scale cell tree for decoding functional diversity with scMustree
2025Open Access
Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D
Nature Structural & Molecular Biology·2025· 5 cited
ScFold: a GNN-based model for efficient inverse folding of short-chain proteins via spatial reduction
Briefings in Bioinformatics·2025Open Access
TopoLa: A Universal Framework to Enhance Cell Representations for Single-cell and Spatial Omics through Topology-encoded Latent Hyperbolic Geometry
arXiv (Cornell University)·2025Open Access
Reconstruction of Diploid High-Order 3D Genome Interactions from Long Noisy Concatemers
2024Open Access
scCAD: Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data
Nature Communications·2024· 19 citedOpen Access
NeoMS: Mass Spectrometry-Based Method for Uncovering Mutated MHC-I Neoantigens
IEEE Transactions on Computational Biology and Bioinformatics·2024· 1 cited
FREE: Enhanced Feature Representation for Isotopic Envelope Evaluation in Top-Down Mass Spectra Deconvolution
Analytical Chemistry·2024· 2 cited
Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data
2024Open Access
Anti-Cancer Peptides Identification and Activity Type Classification With Protein Sequence Pre-Training
IEEE Journal of Biomedical and Health Informatics·2024· 6 cited
Novel Fine-Tuning Strategy on Pre-trained Protein Model Enhances ACP Functional Type Classification
Lecture notes in computer science·2024
Deep learning boosted amyloidosis diagnosis
2023· 1 cited
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Frequent Co-authors

Jianxin Wang(8), Feng Luo(6), Yaohang Li(5), Qilong Feng(4), Hong‐Dong Li(4), Bin Ma(4), Ying Chen(4), Zhuobin Lin(4), Bo Wu(4), Longjian Niu(4), Jiayong Zhong(4), Yimeng Sun(4), Xin Bai(4), Luo-Ran Liu(4), Ruibang Luo(4), Chunhui Hou(4), Chuan‐Le Xiao(4), Qichang Zhao(3), Yunpei Xu(3), Zhenxian Zheng(3)