Pingping Sun

Northeast Normal University — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index591citations19works8.72yr avg
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Research Topics

RNA and protein synthesis mechanisms(5), Monoclonal and Polyclonal Antibodies Research(5), Machine Learning in Bioinformatics(5), vaccines and immunoinformatics approaches(5), Genomics and Phylogenetic Studies(4)

Publications19 total

PLMABFW: A deep learning framework for predicting Antibody–Antigen interactions using protein language model
Journal of Bioinformatics and Computational Biology·2025
NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm
Briefings in Bioinformatics·2024· 4 citedOpen Access
CodonBERT: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism
Bioinformatics·2024· 22 citedOpen Access
Automated exploitation of deep learning for cancer patient stratification across multiple types
Bioinformatics·2023· 8 citedOpen Access
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model
Bioinformatics·2023· 31 citedOpen Access
HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network
Briefings in Bioinformatics·2022· 31 cited
DeepMRMP: A new predictor for multiple types of RNA modification sites using deep learning
Mathematical Biosciences & Engineering·2019· 29 citedOpen Access
Advances in In-silico B-cell Epitope Prediction
Current Topics in Medicinal Chemistry·2018· 42 cited
Prediction of Protein-Protein Interaction Based on Weighted Feature Fusion
Letters in Organic Chemistry·2018
Protein Function Prediction Using Function Associations in Protein–Protein Interaction Network
IEEE Access·2018· 23 citedOpen Access
A novel conformational B-cell epitope prediction method based on mimotope and patch analysis
Journal of Theoretical Biology·2016· 11 cited
The Relationship between B-cell Epitope and Mimotope Sequences
Protein and Peptide Letters·2015· 9 citedOpen Access
Prediction of protein solvent accessibility using PSO-SVR with multiple sequence-derived features and weighted sliding window scheme
BioData Mining·2015· 19 citedOpen Access
PECM: Prediction of extracellular matrix proteins using the concept of Chou’s pseudo amino acid composition
Journal of Theoretical Biology·2014· 47 cited
PSNO: Predicting Cysteine S-Nitrosylation Sites by Incorporating Various Sequence-Derived Features into the General Form of Chou’s PseAAC
International Journal of Molecular Sciences·2014· 110 citedOpen Access
Conformational B-Cell Epitopes Prediction from Sequences Using Cost-Sensitive Ensemble Classifiers and Spatial Clustering
BioMed Research International·2014· 59 citedOpen Access
Analysis and Study for Execution System of Agile Manufacture Setup Structure Basing on Agent
Research Journal of Applied Sciences Engineering and Technology·2013Open Access
Bioinformatics Resources and Tools for Conformational B-Cell Epitope Prediction
Computational and Mathematical Methods in Medicine·2013· 131 citedOpen Access
Identification of Protein Pupylation Sites Using Bi-Profile Bayes Feature Extraction and Ensemble Learning
Mathematical Problems in Engineering·2013· 15 citedOpen Access

Frequent Co-authors

Zhiqiang Ma(10), Jian Zhang(6), Xiaowei Zhao(6), Zilin Ren(4), Sijia Guo(3), Ning Qiao(2), Yanxin Huang(2), Yuxin Li(2), Chang Lu(2), Ka‐Chun Wong(2), Xiangtao Li(2), Jianting Gong(2), Lili Jiang(2), Yixiang Zhang(2), Zhiguo Fu(2), Fei He(2), Yongbing Chen(2), Jingbo Zhang(2), Ning Du(2), Bo Zhou(2)