Sophia J. Wagner

Harvard University — United States

Computer Science · Physical Sciences

12h-index1.4kcitations35works11.52yr avg
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Research Topics

AI in cancer detection(22), Radiomics and Machine Learning in Medical Imaging(12), Cell Image Analysis Techniques(9), Digital Imaging for Blood Diseases(7), Colorectal Cancer Screening and Detection(5)

Publications35 total

A multimodal whole-slide foundation model for pathology
Nature Medicine·2025· 16 citedOpen Access
ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
Nature Metabolism·2025· 3 citedOpen Access
A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics
arXiv (Cornell University)·2025Open Access
A Foundation Model for Spatial Proteomics
arXiv (Cornell University)·2025· 1 citedOpen Access
Image Analysis: Understanding and Mitigating Batch Effects in Histopathology
Trillium Pathology·2025· 1 cited
Generating dermatopathology reports from gigapixel whole slide images with HistoGPT
Nature Communications·2025· 9 citedOpen Access
Molecular-driven Foundation Model for Oncologic Pathology
arXiv (Cornell University)·2025· 7 citedOpen Access
Multimodal Whole Slide Foundation Model for Pathology
arXiv (Cornell University)·2024· 23 citedOpen Access
From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology
Nature Protocols·2024· 68 cited
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis
arXiv (Cornell University)·2024· 21 citedOpen Access
Low-Resource Finetuning of Foundation Models Beats State-of-the-Art in Histopathology
2024· 12 cited
DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology
arXiv (Cornell University)·2024· 2 citedOpen Access
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance
Computers in Biology and Medicine·2024· 9 citedOpen Access
Generating clinical-grade pathology reports from gigapixel whole slide images with HistoGPT
2024· 8 citedOpen Access
B-Cos Aligned Transformers Learn Human-Interpretable Features
arXiv (Cornell University)·2024Open Access
Low-resource finetuning of foundation models beats state-of-the-art in histopathology
arXiv (Cornell University)·2024· 3 citedOpen Access
Die kommende Entwicklung großer Sprachmodelle in der Medizin
Kompass Onkologie·2024· 2 citedOpen Access
DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology
Lecture notes in computer science·2024· 22 cited
From Whole-slide Image to Biomarker Prediction: A Protocol for End-to-End Deep Learning in Computational Pathology
arXiv (Cornell University)·2023· 4 citedOpen Access
Built to Last? Reproducibility and Reusability of Deep Learning Algorithms in Computational Pathology
Modern Pathology·2023· 18 citedOpen Access
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Frequent Co-authors

Tingying Peng(27), Melanie Boxberg(13), Carsten Marr(12), Manuel Tran(8), Jakob Nikolas Kather(7), Christian Matek(6), Julia A. Schnabel(6), Valentin Koch(6), Gregory Patrick Veldhuizen(5), Daniel Truhn(5), Andrew H. Song(5), Ming Y. Lu(5), Anurag Vaidya(5), Guillaume Jaume(5), Cristina Almagro-Pérez(5), Faisal Mahmood(5), Michaela Unger(4), Daniel Reisenbüchler(4), Sayedali Shetab Boushehri(4), Tong Ding(4)