Cristina Almagro-Pérez

Broad Institute — United States

Medicine · Health Sciences

7h-index202citations13works16.32yr avg
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Research Topics

Pancreatic and Hepatic Oncology Research(3), Single-cell and spatial transcriptomics(3), Cancer Immunotherapy and Biomarkers(2), Cancer Genomics and Diagnostics(2), Radiomics and Machine Learning in Medical Imaging(2)

Publications13 total

A multimodal whole-slide foundation model for pathology
Nature Medicine·2025· 16 citedOpen Access
Histology-guided 3D virtual staining of microCT-imaged lung tissue via deep learning
2025· 1 citedOpen Access
Automated Detection of BK Virus in H&E Whole-Slide Images Using Weakly-Supervised Deep Learning and Interpretable Morphological Biomarkers
Lecture notes in computer science·2025
A Foundation Model for Spatial Proteomics
arXiv (Cornell University)·2025· 1 citedOpen Access
AI-driven 3D Spatial Transcriptomics
arXiv (Cornell University)·2025· 2 citedOpen Access
Molecular-driven Foundation Model for Oncologic Pathology
arXiv (Cornell University)·2025· 7 citedOpen Access
Multimodal Whole Slide Foundation Model for Pathology
arXiv (Cornell University)·2024· 23 citedOpen Access
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure
2024· 8 citedOpen Access
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis
arXiv (Cornell University)·2024· 21 citedOpen Access
3D genomic mapping reveals multifocality of human pancreatic precancers
Nature·2024· 108 cited
Abstract 1206: Three-dimensional immune atlas of pancreatic cancer precursor lesions reveals large inter- and intra-lesion heterogeneity
Cancer Research·2024· 1 cited
HEST-1k: A Dataset For Spatial Transcriptomics and Histology Image Analysis
2024· 7 cited
Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions
2023· 7 citedOpen Access

Frequent Co-authors

Andrew H. Song(8), Guillaume Jaume(8), Faisal Mahmood(8), Ming Y. Lu(7), Anurag Vaidya(6), Sophia J. Wagner(5), Ahrong Kim(5), Drew F. K. Williamson(5), Paul Doucet(5), Long P. Le(5), Alicia M. Braxton(4), Ashley Kiemen(4), Toby C. Cornish(4), Ralph H. Hruban(4), Denis Wirtz(4), Laura D. Wood(4), Tong Ding(4), Andrew Zhang(4), Sharifa Sahai(4), Georg K. Gerber(4)