Erik Winfree

Biochemistry, Genetics and Molecular Biology · Life Sciences

60h-index25.0kcitations158works34.02yr avg
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Research Topics

Advanced biosensing and bioanalysis techniques(119), DNA and Biological Computing(72), DNA and Nucleic Acid Chemistry(50), Modular Robots and Swarm Intelligence(34), Molecular Junctions and Nanostructures(22)

Publications158 total

Information processing driven by multicomponent surface condensates
arXiv (Cornell University)·2025Open Access
Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly
Nature·2024· 68 citedOpen Access
Predicting DNA kinetics with a truncated continuous-time Markov chain method
Computational Biology and Chemistry·2023· 2 cited
The Tall Thin Molecular Programmer
2023
Two-dimensional tile displacement can simulate cellular automata
arXiv (Cornell University)·2023Open Access
Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly
arXiv (Cornell University)·2022· 4 citedOpen Access
Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines
arXiv (Cornell University)·2022· 4 citedOpen Access
Winner-take-all dynamics in self-assembly
Bulletin of the American Physical Society·2021
The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics
arXiv (Cornell University)·2021· 1 citedOpen Access
Verifying polymer reaction networks using bisimulation
Theoretical Computer Science·2020· 1 citedOpen Access
Programming and simulating chemical reaction networks on a surface
Journal of The Royal Society Interface·2020· 39 citedOpen Access
Supplementary material from "A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures"
Figshare·2020Open Access
Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions
Theoretical Computer Science·2019· 15 citedOpen Access
Author Correction: Diverse and robust molecular algorithms using reprogrammable DNA self-assembly
Nature·2019· 5 citedOpen Access
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly
Nature·2019· 296 cited
Chemical Reaction Networks and Stochastic Local Search
Lecture notes in computer science·2019· 11 cited
Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains
Lecture notes in computer science·2019· 4 cited
Reversible Computation Using Swap Reactions on a Surface
Lecture notes in computer science·2019· 3 cited
Effective design principles for leakless strand displacement systems
Proceedings of the National Academy of Sciences·2018· 128 citedOpen Access
Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems
Journal of The Royal Society Interface·2018· 16 citedOpen Access
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Frequent Co-authors

Paul W. K. Rothemund(11), David Soloveichik(8), Georg Seelig(5), Lulu Qian(5), David Y. Zhang(4), Bernard Yurke(4), Jongmin Kim(4), Nadrian C. Seeman(3), Jehoshua Bruck(3), Robert D. Barish(3), Niranjan Srinivas(3), Damien Woods(3), Niles A. Pierce(3), Rebecca Schulman(3), Furong Liu(2), Nadine Dabby(2), Hao Yan(2), Nick Papadakis(2), Joseph Schaeffer(2), Robert M. Dirks(2)