Vsevolod J. Makeev

Cancer Research UK — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

37h-index9.4kcitations193works4.32yr avg
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Research Topics

Genomics and Chromatin Dynamics(64), RNA and protein synthesis mechanisms(58), RNA Research and Splicing(35), Genomics and Phylogenetic Studies(22), RNA modifications and cancer(20)

Publications189 total

Inferring binding specificities of human transcription factors with the wisdom of crowds
2025Open Access
Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
Communications Biology·2025· 3 citedOpen Access
Exclusive functional signatures for gene annotation with vast OpenOrd layout
Algorithms for Molecular Biology·2025Open Access
Codebook Motif Explorer Supplementary Dataset
Zenodo (CERN European Organization for Nuclear Research)·2025· 2 citedOpen Access
Functional characterization of the ATOH1 molecular subtype indicates a pro-metastatic role in small cell lung cancer
Cell Reports·2025· 7 citedOpen Access
Cell-free DNA methylome and fragmentome analysis for disease relapse monitoring in patients with Ewing Sarcoma
2025Open Access
Author Correction: A new cancer/testis long noncoding RNA, the OTP-AS1 RNA
Scientific Reports·2025Open Access
Statistical framework for calling allelic imbalance in high-throughput sequencing data
Nature Communications·2025· 5 citedOpen Access
Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing Sarcoma - data processing and classifier building pipelines
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing Sarcoma - figure generation
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing Sarcoma - figure generation
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing Sarcoma - data processing and classifier building pipelines
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
A new cancer/testis long noncoding RNA, the OTP-AS1 RNA
Scientific Reports·2024· 1 citedOpen Access
Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
2024· 1 citedOpen Access
Perspectives on Codebook: sequence specificity of uncharacterized human transcription factors
2024· 7 citedOpen Access
Correction: Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index
BMC Bioinformatics·2024· 1 citedOpen Access
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index
BMC Bioinformatics·2024· 2 citedOpen Access
Annotation of nuclear lncRNAs based on chromatin interactions
PLoS ONE·2024· 2 citedOpen Access
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
Genome biology·2024· 54 citedOpen Access
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known population genetic variants into the minimap2 index
Research Square (Research Square)·2024Open Access
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Frequent Co-authors

Ivan V. Kulakovskiy(22), Ilya E. Vorontsov(14), Alexander V. Favorov(11), Yulia A. Medvedeva(10), Ivan Yevshin(7), Fedor Kolpakov(7), Artem S. Kasianov(7), Peter Arner(4), Semyon Kolmykov(4), Dmitri Papatsenko(4), Mikhail S. Gelfand(4), Mireille Régnier(3), Ruslan Sharipov(3), Vladimir B. Bajić(3), Imad Abugessaisa(3), Alexandre Fort(3), Jayson Harshbarger(3), Akira Hasegawa(3), Kosuke Hashimoto(3), Peter Heutink(3)